View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13838_low_6 (Length: 421)
Name: NF13838_low_6
Description: NF13838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13838_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 11175095 - 11175219
Alignment:
| Q |
124 |
gagggacaaatgagtcaacaaaattgttgtttttagtttataatatgtactaaatacatcaatatttatcgatctatttttctcttacaaaaagaaccaa |
223 |
Q |
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|||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||| |
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| T |
11175095 |
gagggacaaatgagtcaacaaaattgttgtatctattttataatatgtactaaatacattaatatttattgatctatttttctcttacaaaaag-atcaa |
11175193 |
T |
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| Q |
224 |
agagagtgtttattaaggagattatt |
249 |
Q |
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| T |
11175194 |
caaaagtgtttattaaggagattatt |
11175219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 253
Target Start/End: Original strand, 11135191 - 11135319
Alignment:
| Q |
124 |
gagggacaaatgagtcaacaa-aattgttgtttttagtttataatatgtactaaatacatcaatatttatcgatctatttttctcttacaaaaagaacca |
222 |
Q |
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|||| ||||||||||| |||| |||| |||| ||||||| ||||||| |||||||||||||| ||||| |||||||||| ||||| ||||||| ||| |
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| T |
11135191 |
gaggaacaaatgagtctacaagaattattgtatttagtt-ataatatagactaaatacatcaacctttattaatctattttt-tcttataaaaagagcca |
11135288 |
T |
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| Q |
223 |
aagagagtgtttattaaggagattattggaa |
253 |
Q |
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| T |
11135289 |
aagagagtgtttattaaggagattattggaa |
11135319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 398
Target Start/End: Original strand, 11135376 - 11135478
Alignment:
| Q |
303 |
atgttgtaaatttgttgaaacaatttagaattttggac-------taattaaacttactttatcaggtgatcatgaagaacttttcaaaacgataaggaa |
395 |
Q |
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|||||||||||| |||||||||||||||||||| |||| |||||||||||||||||| | ||||||||||||| ||||||||| | | |||||| |
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| T |
11135376 |
atgttgtaaattggttgaaacaatttagaatttgggacgagggactaattaaacttactttataaagtgatcatgaagaccttttcaaagcaacaaggaa |
11135475 |
T |
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| Q |
396 |
ata |
398 |
Q |
| |
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||| |
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| T |
11135476 |
ata |
11135478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 12012105 - 12012031
Alignment:
| Q |
131 |
aaatgagtcaacaaaattgttgtttttagtttataatatgtactaaatacatcaatatttatcgatctatttttc |
205 |
Q |
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| T |
12012105 |
aaatgtgtgaacaaagttgatgtatttagtttataatattgactaaatacatcaatttttgttgatccatttttc |
12012031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 23934634 - 23934593
Alignment:
| Q |
175 |
aaatacatcaatatttatcgatctatttttctcttacaaaaa |
216 |
Q |
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| T |
23934634 |
aaatacatcaatatttattgatttatttttctcttataaaaa |
23934593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 19610807 - 19610864
Alignment:
| Q |
129 |
acaaatgagtcaacaaaa-ttgttgtttttagtttataatatgtactaaatacatcaa |
185 |
Q |
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||||||| |||||||||| ||| ||| ||||||| |||||||| |||||||||||||| |
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| T |
19610807 |
acaaatgggtcaacaaaaattgatgtatttagttcataatatggactaaatacatcaa |
19610864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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