View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13839_high_3 (Length: 442)
Name: NF13839_high_3
Description: NF13839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13839_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 95 - 434
Target Start/End: Original strand, 39537049 - 39537388
Alignment:
| Q |
95 |
gatagcttaatacttatttcattcattttgctattaaattaggcacttttccaagcaggcagaaatttggtcaaagaacccttgttcatggctctggaca |
194 |
Q |
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| T |
39537049 |
gatagcttaatacttatttcattcattttgctattaaattaggcacttttccaagcaggcagaaatttggtgaaagaacccttgttcatggctctggaca |
39537148 |
T |
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| Q |
195 |
gagatagctcagtttgttaaaaggaatacgtcaattgactttatgagtttgaaagtaacaatgctttgctgtctttttggtattttactgtgcaaatcgc |
294 |
Q |
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| T |
39537149 |
gagatagctcagtttgttaaaaggaatacgtcaattgactttatgagtttgaaagtaacaatgctttgctgtctttttggtattttactgtgcaaattgc |
39537248 |
T |
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| Q |
295 |
ccttcaaatttttgctgtctactgaggtagtttacccatctttgtaaatttcgctgttttggtttttagttttggctcatacaaaggctattgttcaacc |
394 |
Q |
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| T |
39537249 |
ccttcaaatttttgctgtctactgaggtagtttacctatctttgtaaatttccttgttttggttttttgttttggctcatacaaaggctattgttcaact |
39537348 |
T |
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| Q |
395 |
ctctttcaatttttcgtcacttttcttaactttctctgct |
434 |
Q |
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| T |
39537349 |
ctctttcaatttttcgtcacttttcttaactttctctgct |
39537388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 39536974 - 39537002
Alignment:
| Q |
20 |
atctttaggtttggatgactaatctaata |
48 |
Q |
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| T |
39536974 |
atctttaggtttggatgactaatctaata |
39537002 |
T |
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