View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13839_high_6 (Length: 260)
Name: NF13839_high_6
Description: NF13839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13839_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 40689543 - 40689299
Alignment:
| Q |
19 |
ccaatagaatcaaacaatttgccatatcatattcttcatcaataacaacagtactgtcttgtttttcttcaacataagaagttgttggagatgtattatt |
118 |
Q |
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| T |
40689543 |
ccaatagaatcaaacaatttgccatatcatattcttcatcaataacaacagtactgtcttgtttttcttcaacataagaagttgttggagatgtattatt |
40689444 |
T |
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| Q |
119 |
gttgttggcg------------ttattgttaacatcatcaacattgttgcaatcttctctttctcctgttcctcctcctcctccttcaccagttgaagaa |
206 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40689443 |
gttgttggtgttaatgatggtattattgttaacatcatcaacattgttgcaatcttctctttctcc---tcctcctcctcctccttcaccagttgaagaa |
40689347 |
T |
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| Q |
207 |
ttagcagtgatggagaaaggtataggagattgtggcctaacccctttg |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40689346 |
ttagcagtgatggagaaaggtataggagattgtggcctaacccttttg |
40689299 |
T |
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