View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13839_low_1 (Length: 651)
Name: NF13839_low_1
Description: NF13839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13839_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 37838697 - 37838416
Alignment:
| Q |
18 |
atacttacaatcatttgtgaaaggaatttagggagtctcaaaggtttgagaaggaaactgcatatttgtgtgagtgcaaaaatgataaccaattgtaact |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37838697 |
atacttacaatcatttgtgaaaggaatttagggagtctcaaaggtttgagaaggaaactgcatatttgtgtgagtgcaaaaatgataaccaattgtaact |
37838598 |
T |
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| Q |
118 |
caaacaaggtcaaaaaagatttcattggtctcctttcattttcgtgactactccataaaccatctgaaacaatatggggtggagcctcaaaacaaatttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37838597 |
caaacaaggtcaaaaaagatttcattggtctcctttcattttcgtgaccactccataaaccatctgaaacaatatggggtggagcctcaaaacaaatttt |
37838498 |
T |
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| Q |
218 |
gtatacagtttcattcaatcttttaatttcgtagaacaaagtatcatttgaatttatgctcatttttgtatgacttaatcca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37838497 |
gtatacagtttcattcaatcttttaatttcgtagaacaaagtatcatttgaatttatgctcatttttgtatgacttaatcca |
37838416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 37844260 - 37843979
Alignment:
| Q |
18 |
atacttacaatcatttgtgaaaggaatttagggagtctcaaaggtttgagaaggaaactgcatatttgtgtgagtgcaaaaatgataaccaattgtaact |
117 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
37844260 |
atacttacaatcatttgtgaaagaaattgagggagtctcaaagatttgagaagaaaacgacatatttgcgtgagtgcaaaaatgataaccaattgtaact |
37844161 |
T |
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| Q |
118 |
caaacaaggtcaaaaaagatttcattggtctcctttcattttcgtgactactccataaaccatctgaaacaatatggggtggagcctcaaaacaaatttt |
217 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||| || | || |||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
37844160 |
caaacaaggtcaagaaagatttcattggtctccttccattttcatggccaccccataaaccatctgaaacaatatggggtggagcctctaaataaatttt |
37844061 |
T |
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| Q |
218 |
gtatacagtttcattcaatcttttaatttcgtagaacaaagtatcatttgaatttatgctcatttttgtatgacttaatcca |
299 |
Q |
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| T |
37844060 |
gtaacctgcttcattcaatcttttaatttcgtagaacaaagtatcatttgaatttatgctcatttttgtatgacttattcca |
37843979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 364 - 632
Target Start/End: Complemental strand, 2446723 - 2446444
Alignment:
| Q |
364 |
aaccttgtaatttatcgaagatttgtcccatgatattgttttgatgataataaggaaccaaacttgttgactgtgttatgtt-----gtctttgaagttt |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2446723 |
aaccttgtaatttatcgaagatttgtcccatgatattgttttgatgataataaggaaccaaacttgttgactgtgttatgttatgttgtctttgaagttt |
2446624 |
T |
|
| Q |
459 |
gagagtggagtgaaggtagagaattattaatatactattgattgattaattgataataaatgaatgaatgaaaatgaacgctatgctttggatttagatt |
558 |
Q |
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| T |
2446623 |
gagagtggagtgaaggtagagaattattaatatactattgattgattaattgataataaatgaatgaatgaaaatgaacgctatgctttggatttagatt |
2446524 |
T |
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| Q |
559 |
tagcttctcaat------cacatgcttacattactcatattttactctttcaatcattccaatttccacgcacacgctac |
632 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2446523 |
tagcttctcaatcacaatcacatgcttacattactcatattttactctttcaatcattccaatttccacgcacacgctac |
2446444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 38383666 - 38383945
Alignment:
| Q |
19 |
tacttacaatcatttgtgaaaggaatttagggagtctcaaaggtttgagaaggaaactgcatatttgtgtgagtgcaaaaatgataaccaattgtaactc |
118 |
Q |
| |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||| |
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| T |
38383666 |
tacttacaatcatttgtggaaggaattgagggagtctcaaaggtttgagaaggaaactacatatttgagtgagtgcaaaaatgataatcaactgtaactc |
38383765 |
T |
|
| Q |
119 |
aaacaaggtcaaaaaagatttcattggtctcctttcattttcgtgactactccataaaccatctgaaacaatatggggtggagcctcaaaacaaattttg |
218 |
Q |
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|||||| || || || |||||||||||||||||| |||| ||||| | || |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38383766 |
aaacaatgttaagaaggatttcattggtctccttccattatcgtggccaccccataaaccatctgaaacaatatggggtggagcctcaaaacaaactttg |
38383865 |
T |
|
| Q |
219 |
tatacagtttcattcaatcttttaatttcgtagaacaaagtatcatttgaatttatgctcatttttgtatgacttaatcca |
299 |
Q |
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| T |
38383866 |
tatattggtccattcaatcttttaatttcgttgaacaaagtataatttgaatttatgctca-ttttgtatgacttaatcca |
38383945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 38392523 - 38392803
Alignment:
| Q |
19 |
tacttacaatcatttgtgaaaggaatttagggagtctcaaaggtttgagaaggaaactgcatatttgtgtgagtgcaaaaatgataaccaattgtaactc |
118 |
Q |
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|
||||||||||||||| || |||||||| |||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
38392523 |
tacttacaatcatttctggaaggaattgagggagtctcaatggtttgagaagaaaactacatatttgagtgagtgcaaaaatgataaccaattgtaactc |
38392622 |
T |
|
| Q |
119 |
aaacaaggtcaaaaaagatttcattggtctcctttcattttcgtgactactccataaaccatctgaaacaatatggggtggagcctcaaaacaaattttg |
218 |
Q |
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||||||| |||| || |||||||||||||||||| ||||||||| | || ||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
38392623 |
aaacaagatcaagaaggatttcattggtctccttccattttcgtagccaccccataaaccatctgaaacaatatggggtggagcctcagaacaaacattg |
38392722 |
T |
|
| Q |
219 |
tatacagtttcattcaatcttttaatttcgtagaacaaagtatcatttgaatttatgctcatttttgtatgacttaatcca |
299 |
Q |
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| T |
38392723 |
tatattggtccattcaatcttttaatttcgttgaacaaagtataatttgaatttatgctcatttttgtatgacttaatcca |
38392803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 38401099 - 38401376
Alignment:
| Q |
19 |
tacttacaatcatttgtgaaaggaatttagggagtctcaaaggtttgagaaggaaactgcatatttgtgtgagtgcaaaaatgataaccaattgtaactc |
118 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
38401099 |
tacttacaatcatttgtggaaggaattgagggagtctcaaaggtttgagaagaaaactacatatttgagtgagtgcaaaaatgataaccaattgtaactc |
38401198 |
T |
|
| Q |
119 |
aaacaaggtcaaaaaagatttcattggtctcctttcattttcgtgactactccataaaccatctgaaacaatatggggtggagcctcaaaacaaattttg |
218 |
Q |
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||||| || || || ||||||||||| || || |||||||||| | | |||||||||||||||||||||| | ||||||||||||| ||||| ||| |
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| T |
38401199 |
aaacatgggaaagaagaatttcattggtgtctttccattttcgtggccagcccataaaccatctgaaacaataggaggtggagcctcaatacaaacattg |
38401298 |
T |
|
| Q |
219 |
tatacagtttcattcaatcttttaatttcgtagaacaaagtatcatttgaatttatgctcatttttgtatgacttaat |
296 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38401299 |
tatattgtttcattcaatcttttaatttggtagaacaaagtatcatttgaatttatgctcattttcgtatgacttaat |
38401376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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