View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13839_low_11 (Length: 235)
Name: NF13839_low_11
Description: NF13839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13839_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 33531320 - 33531526
Alignment:
| Q |
13 |
attattctagatttatccatagcaaatattacaaccctagattatgaaagaaagcaatattttcgatatccatagaaaatcatacaaccctagatttatc |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531320 |
attatcctagatttatccatagcaaatattacaaccctagattatgaaagaaagcaatattttcgatatccatagaaaatcatacaaccctagatttatc |
33531419 |
T |
|
| Q |
113 |
cttccaaatagtttcttgataagaatgattgagaaagatcaagttagggttgaaattcttgagcttgcaaattatctgagatgccataagaatacaattg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33531420 |
cttccaaatagtttcttgataagaatgattgagaaagatcaagttaggtttgaaattcttgagcttgcaaattatctgagatgccataagaatacaattg |
33531519 |
T |
|
| Q |
213 |
ttcctta |
219 |
Q |
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||||||| |
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| T |
33531520 |
ttcctta |
33531526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 16870027 - 16869821
Alignment:
| Q |
13 |
attattctagatttatccatagcaaatattacaaccctagattatgaaagaaagcaatattttcgatatccatagaaaatcatacaaccctagatttatc |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16870027 |
attatcctagatttatccatagcaaatattacaaccctagattatgaaagaaagcaatattttcgatatccatagaaaatcatacaaccctagatttatc |
16869928 |
T |
|
| Q |
113 |
cttccaaatagtttcttgataagaatgattgagaaagatcaagttagggttgaaattcttgagcttgcaaattatctgagatgccataagaatacaattg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16869927 |
cttccaaatagtttcttgataagaatgattgagaaagatcaagttaggtttgaaattcttgagcttgcaaattatctgagatgccataagaatacaattg |
16869828 |
T |
|
| Q |
213 |
ttcctta |
219 |
Q |
| |
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||||||| |
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| T |
16869827 |
ttcctta |
16869821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 208
Target Start/End: Complemental strand, 25015691 - 25015537
Alignment:
| Q |
55 |
tatgaaagaaagcaatattttcgatatccatagaaaatcatacaaccctagatttatccttccaaatagtttcttgataagaatgattgagaaagatcaa |
154 |
Q |
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|||||||||| |||| ||||| || | |||||||| | |||| |||| | |||||||||| ||||| |||||||||||||| | ||||| | ||||| || |
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| T |
25015691 |
tatgaaagaaggcaaaattttagacacccatagaataacatataaccttggatttatcctgccaaaaagtttcttgataagcaagattgtgcaagataaa |
25015592 |
T |
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| Q |
155 |
g-ttagggttgaaattcttgagcttgcaaattatctgagatgccataagaataca |
208 |
Q |
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| | || ||| ||||||||| |||||||| |||||||||||||| | ||||||| |
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|
| T |
25015591 |
gcattggtttgtaattcttgaacttgcaaactatctgagatgccaaaggaataca |
25015537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 24993045 - 24992968
Alignment:
| Q |
53 |
attatgaaagaaagcaatattttcgatatccatagaaaatcatacaaccctagatttatccttccaaatagtttcttg |
130 |
Q |
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||||||||||||||||| | |||||| | |||| ||||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
24993045 |
attatgaaagaaagcaaaaatttcgacactcataaaaaatcatagaaccctggatttatccttccaaaaagtttcttg |
24992968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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