View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13839_low_2 (Length: 536)
Name: NF13839_low_2
Description: NF13839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13839_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 36601625 - 36601980
Alignment:
| Q |
18 |
cattgaagactaggcaaatgtcaaagatctttcatatttttacaaatccaatggtgggcacagcaagattgatactaaatatta----ctataaacattc |
113 |
Q |
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| T |
36601625 |
cattgaagactaggcaaatgtcaaagatctttcatatttttacaaatccaatggtgggcacagcaagattgatactaaatattataaactataaacattc |
36601724 |
T |
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| Q |
114 |
ataatattttaaaccatagacattcataataaattgataaaatgataccatcaatcacttactgtcacaaactcggaagtaaaatggttgtttcaacttt |
213 |
Q |
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| T |
36601725 |
ataatattttaaactataaacattcataataaattgataaaatgataccatcaatcacttactgtcacaaactcggaagtaaaatggttgtttcaacttt |
36601824 |
T |
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| Q |
214 |
caaaccagtcacactacattgcacataagaaagaacaccagagtaaatccacaaaaacgaacaacgattacgctaacatttgattactacatgaaaggat |
313 |
Q |
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| T |
36601825 |
caaaccagtcacactacattgcacataagaaagaacaccagagtaaatccacagaaacgaacaaccattacgctaacatttgattactatatgaaaggat |
36601924 |
T |
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| Q |
314 |
ctaatgccatgttctcacacttcacacaaataaagtagctatatacataatagtat |
369 |
Q |
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| T |
36601925 |
ctaatgccatgttctcacacttcacccaaataaagtagctatacacataatagtat |
36601980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 433 - 534
Target Start/End: Original strand, 36602044 - 36602145
Alignment:
| Q |
433 |
tgtgcagcttcaaattcctcttcagagggttctggcatatcacttccaccatactttgatactagagacgcgaacattgaatcaaactgacctttcatct |
532 |
Q |
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| T |
36602044 |
tgtgcagcttcaaattcctcttcagagggttctggcatatcacttccaccatactttgatactagagacgcgaacattgaatcaaactgacctttcctct |
36602143 |
T |
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| Q |
533 |
ca |
534 |
Q |
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|| |
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| T |
36602144 |
ca |
36602145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 438 - 519
Target Start/End: Complemental strand, 20992959 - 20992878
Alignment:
| Q |
438 |
agcttcaaattcctcttcagagggttctggcatatcacttccaccatactttgatactagagacgcgaacattgaatcaaac |
519 |
Q |
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| T |
20992959 |
agcttcaaattcctcttcagagggttctggcacatggcttccaccatattttgatattagagacgagaacatagaatcaaac |
20992878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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