View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13839_low_3 (Length: 521)
Name: NF13839_low_3
Description: NF13839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13839_low_3 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 3403472 - 3402953
Alignment:
| Q |
1 |
atcctccacagctaggattgcctaccaatcctctcagttgaagcaagatgaagataggctgttaggtatttggaccagcagtagacatgggagcagctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3403472 |
atcctccacagctaggattgcctaccaatcctctcagttgaagcaagatgaagataggctgttaggtatttggaccagcagtagacatgggagcagctgg |
3403373 |
T |
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| Q |
101 |
agttgaaattacctcattattctgtgtttttagcttctgctcatgttcacttggcagaaaactgcctaccactacctgatacatatcaatccattggaaa |
200 |
Q |
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| T |
3403372 |
agttgaaattacctcattattctgtgtttttagcttctgctcatgttcacttggcagaaaactgcctaccactacctgatacatatcaatccattggaaa |
3403273 |
T |
|
| Q |
201 |
gagtgatgataatttgcataaacttgtcacttagtactaattaccacaaatcaccagaattgcataaatttgttatatagtggccatttctttaacagga |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3403272 |
gagtgatgataatt-gcataaacttgtcacttagtactaattaccacaaatcaccagaattgcataaatttgttatatagtggccatttccttaacagga |
3403174 |
T |
|
| Q |
301 |
aacagataatgttactaaatcatcaactttacttattcaagataaataagtataactagttaactacataagcatcctgctagactttagtttgtgaaaa |
400 |
Q |
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| T |
3403173 |
tacagataatgttactaaatcatcaactttacttatccaagataaataagtataactagttaactacataagcatcctgctagactttagtttgtgaaaa |
3403074 |
T |
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| Q |
401 |
agacatattccctacccaggtacttacatttacaggtcttgccgcctccaatgttcctgctacgcgaccgccatcaacatggccatgtacatccaccaca |
500 |
Q |
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| T |
3403073 |
agacatattccctacccaggtacttacatttacaggacttgcagccaccaatggaccagctacgcgaccgccaacaacatgtccatgtagatccaccaaa |
3402974 |
T |
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| Q |
501 |
gaatcagtcatgcctccagat |
521 |
Q |
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| T |
3402973 |
gaaacactcatgccaccagat |
3402953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 111 - 250
Target Start/End: Complemental strand, 3401995 - 3401854
Alignment:
| Q |
111 |
acctcattattctgtgtttttagcttctgctca---tgttcacttggcagaaaactgcctaccactacctgatacatatcaatccattggaaagagtgat |
207 |
Q |
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|||||||| | ||||||||||||| |||||||| |||||| || |||| |||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
3401995 |
acctcattttcctgtgtttttagcatctgctcagactgttcatttcccagagaactgcttaccactacctgatacatatcaatccattggaaagagtaat |
3401896 |
T |
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| Q |
208 |
gataatttgcataaacttgtcacttagtactaattaccacaaa |
250 |
Q |
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| T |
3401895 |
gagaa-ttgcatagacttgtcactgagaattagttaccacaaa |
3401854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 3373870 - 3373765
Alignment:
| Q |
102 |
gttgaaattacctcattattctgtgtttttagcttctgctcatg---ttcacttggcagaaaactgcctaccactacctgatacatatcaatccattgga |
198 |
Q |
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|||||| |||||||||| ||||| |||| ||||||||||||||| |||| ||| || ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3373870 |
gttgaagttacctcatttttctgcgtttctagcttctgctcatgctgttcatttgccataaaactgccgaccactacctgatacatatcaatccattgga |
3373771 |
T |
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| Q |
199 |
aagagt |
204 |
Q |
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|||||| |
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| T |
3373770 |
aagagt |
3373765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 144 - 250
Target Start/End: Complemental strand, 3378038 - 3377933
Alignment:
| Q |
144 |
tgttcacttggcagaaaactgcctaccactacctgatacatatcaatccattggaaagagtgatgataatttgcataaacttgtcacttagtactaatta |
243 |
Q |
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|||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| | || || ||||||| |||||||||| || | || ||| |
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| T |
3378038 |
tgttcatttgccagaaaactgcttaccactacctgatacatatcaatccactggaaagagtaacga-aaattgcatagacttgtcactgagaattagtta |
3377940 |
T |
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| Q |
244 |
ccacaaa |
250 |
Q |
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||||||| |
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| T |
3377939 |
ccacaaa |
3377933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 3369277 - 3369232
Alignment:
| Q |
102 |
gttgaaattacctcattattctgtgtttttagcttctgctcatgtt |
147 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
3369277 |
gttgaaattacctcattcttctgtgtgtttagcttctgctcatgtt |
3369232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 3394894 - 3394849
Alignment:
| Q |
102 |
gttgaaattacctcattattctgtgtttttagcttctgctcatgtt |
147 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
3394894 |
gttgaaattacctcattcttctgtgtgtttagcttctgctcatgtt |
3394849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 3379931 - 3379876
Alignment:
| Q |
173 |
tacctgatacatatcaatccattggaaagagtgatgataatttgcataaacttgtca |
229 |
Q |
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||||||| |||||||||||||||||||||||| || | || ||| |||||||||||| |
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| T |
3379931 |
tacctgacacatatcaatccattggaaagagtaattagaa-ttgaataaacttgtca |
3379876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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