View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13839_low_5 (Length: 405)
Name: NF13839_low_5
Description: NF13839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13839_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 1131588 - 1131216
Alignment:
| Q |
20 |
tttcttacgtttcgtctcctccaaacaacctcacggagactgcttccaccaaatgctgcgacgctttctcgtcgacgttcttgccgaactctctctgttt |
119 |
Q |
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| T |
1131588 |
tttcttacgtttcgtctcctccaaacaacctcacggagactgcttccaccaaatgctgcgacgctttctcgtcgacgttcttgccgaactctctctgttt |
1131489 |
T |
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| Q |
120 |
ctgttatctcctccgtgataatcacattctcggcttccctctcaactccacaaggcttcaatcgctctcctcgctatgtgtctcgcctccaccaactact |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
1131488 |
ctgttatctcctccgtgataatcacattctcggcttccctctcaactccacaaggattcaatcgctttcctcgctatgtgtctcacctccaccaactact |
1131389 |
T |
|
| Q |
220 |
tcttctctcaatgttctttgcgcaggttcgttctttattctttcttttcaaagattctttagaatttagatacaaataatcaaatacagagagattaatt |
319 |
Q |
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| T |
1131388 |
tcttctctcaatgttctttgcgcaggttcgttctttattctttcttttcaaagattctttagaatttagatacaaataatcaaatacagagagattaatt |
1131289 |
T |
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| Q |
320 |
gaattgttgttgtttgattcacattgttacagaatcacggactcttcctcctctcggcagcgcagatattctt |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1131288 |
gaattgttgttgtttgattcacattgttacagaatcacggactcttcctcctctcggcagcgcagatattctt |
1131216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 392
Target Start/End: Original strand, 22970923 - 22971312
Alignment:
| Q |
20 |
tttcttacgtttcgtctcctccaaacaacctcacggagactgcttccaccaaatgctgcgacgctttctcgtcgacgttcttgccgaactctctctgttt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
22970923 |
tttcttacgtttcgtctcctccaaacaacctcacggagactgcttccaccaaatgctgcgacgctttctggtcgacgttcgtgccgaactctctctgttt |
22971022 |
T |
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| Q |
120 |
ctgttatctcctccgtgataatcacattctcggcttccctctcaactccacaaggcttcaatcgctctcctcgctatgtgtctcgcctccaccaactact |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22971023 |
ctgttatctcctccgtgataatcacattctcggcttccctctcaactccacaaggcttcaatcgctctcctcgctatgtgtctcacctccaccaactact |
22971122 |
T |
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| Q |
220 |
tcttctctcaatgttctttgcgcaggttcgttctttattctttcttttcaaagattctttagaatttagatacaaataatcaaatacagagagatt---- |
315 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
22971123 |
tcttctttcaatgttctttgcgcaggttcgttctttgttctttcttttcaaagattttttagaatttagatacaaataatcaaataaagagagattaatt |
22971222 |
T |
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| Q |
316 |
-------------aattgaattgttgttgtttgattcacattgttacagaatcacggactcttcctcctctcggcagcgcagatattctt |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22971223 |
gaattgaaattgaaattgaattgttgttgtttgattcacattgttacagaatcacggactcttcctcctctcggcagcgcagatattctt |
22971312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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