View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13839_low_6 (Length: 305)
Name: NF13839_low_6
Description: NF13839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13839_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 49 - 288
Target Start/End: Complemental strand, 46759623 - 46759391
Alignment:
| Q |
49 |
agtctcaagcgccgcccgtattacctttgaattcctaggtgtccaataatacatacatgcctctcttgaaaagaatatcccaatttccaaaacaaaacta |
148 |
Q |
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| T |
46759623 |
agtctcaagcgccgcccgtattacctttgaattcctaggtgtccaataatacatacatgcctctcttgaaaagaata-cccaatttccaaaacaaaacta |
46759525 |
T |
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| Q |
149 |
ccttttgggtttggctcccaagtttggactattccttttttgactaaagtaaattgccatgcctaaaactttccttatcataactgaatctccattgatc |
248 |
Q |
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| T |
46759524 |
ccttttgggtttggctcccaagtttggactattccttttttgactaaagtaaattgccatgcctaaaactttccttatcataactgaatctccattgatc |
46759425 |
T |
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| Q |
249 |
taatcctcatggttagagttttaattttttaatatactac |
288 |
Q |
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| T |
46759424 |
taatcc------ttagagttttaattttttaatatactac |
46759391 |
T |
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