View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13839_low_7 (Length: 283)

Name: NF13839_low_7
Description: NF13839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13839_low_7
NF13839_low_7
[»] chr2 (9 HSPs)
chr2 (1-215)||(1435892-1436106)
chr2 (1-201)||(1429282-1429482)
chr2 (1-171)||(1441311-1441481)
chr2 (6-171)||(1448720-1448885)
chr2 (20-171)||(1455490-1455641)
chr2 (1-84)||(21019576-21019662)
chr2 (214-258)||(1436156-1436200)
chr2 (214-260)||(21018100-21018146)
chr2 (214-260)||(1429546-1429592)
[»] chr1 (1 HSPs)
chr1 (37-171)||(43826501-43826635)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 1435892 - 1436106
Alignment:
Q  1 gggatctgctagggggattgcttacttgcattatagttgtgaccctaagattattcaccgtgatgtgaaagctgcaaatatattgttggatgagaaattt 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1435892 gggatctgccagggggattgcttacttgcattatagttgtgaccctaagattattcaccgtgatgtgaaagctgcaaatatattgttggatgaggaattt 1435991  T
Q  101 gaagcaattgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtctttggtatgattgggcatatagcacctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1435992 gaagcaattgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtctttggtacgattgggcatatagcacctg 1436091  T
Q  201 aatatctcttaactg 215  Q
    |||||||||||||||    
T  1436092 aatatctcttaactg 1436106  T

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Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 1429282 - 1429482
Alignment:
Q  1 gggatctgctagggggattgcttacttgcattatagttgtgaccctaagattattcaccgtgatgtgaaagctgcaaatatattgttggatgagaaattt 100  Q
    ||||||||| || ||| |||||||||||||| ||   |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  1429282 gggatctgccagagggcttgcttacttgcatgatcactgtgaccctaagattattcatcgtgatgtgaaagctgcaaatatattgttggatgaggaattt 1429381  T
Q  101 gaagcaattgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtctttggtatgattgggcatatagcacctg 200  Q
    |||||| |||| |||||||| ||||  |||| |||||||||||||||||||||||||| |||||||||||||  ||||| |||||| |||||||||||||    
T  1429382 gaagcagttgtgggagatttcggtttagcaaagcttatggattacaaagatacccatgttactactgctgtccgtggtacgattggacatatagcacctg 1429481  T
Q  201 a 201  Q
    |    
T  1429482 a 1429482  T

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Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 1441311 - 1441481
Alignment:
Q  1 gggatctgctagggggattgcttacttgcattatagttgtgaccctaagattattcaccgtgatgtgaaagctgcaaatatattgttggatgagaaattt 100  Q
    |||| |||| |||||| |||||||||||||| ||  ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| |||||    
T  1441311 gggagctgccagggggcttgcttacttgcatgatcattgtgaccctaagattattcatcgtgatgtgaaagcagcgaatatattgttggatgaggaattt 1441410  T
Q  101 gaagcaattgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgt 171  Q
    |||||| ||||||||||||| ||||  |||| |||||||| |||||||||||||||||  |||||||||||    
T  1441411 gaagcagttgttggagatttcggtttagcaaagcttatggcttacaaagatacccatgtcactactgctgt 1441481  T

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Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 6 - 171
Target Start/End: Original strand, 1448720 - 1448885
Alignment:
Q  6 ctgctagggggattgcttacttgcattatagttgtgaccctaagattattcaccgtgatgtgaaagctgcaaatatattgttggatgagaaatttgaagc 105  Q
    |||| |||||| |||||||||||||| ||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||| |||    
T  1448720 ctgccagggggcttgcttacttgcatgatcattgtgaccctaagattattcatcgtgatgtgaaagctgcaaatatattgttggatgatgaatttgtagc 1448819  T
Q  106 aattgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgt 171  Q
    | ||||||||||||| ||||  |||| |||||||| |||||||||||||||||  |||||||||||    
T  1448820 agttgttggagatttcggtttagcaaggcttatggcttacaaagatacccatgtcactactgctgt 1448885  T

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Target: chr2; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 1455490 - 1455641
Alignment:
Q  20 gcttacttgcattatagttgtgaccctaagattattcaccgtgatgtgaaagctgcaaatatattgttggatgagaaatttgaagcaattgttggagatt 119  Q
    |||||||||||| ||  |||||| |||||| ||||||| |||||||||||||| || |||||||||||||||||| ||||||||||| ||||||||||||    
T  1455490 gcttacttgcatgatcattgtgatcctaaggttattcatcgtgatgtgaaagcagcgaatatattgttggatgaggaatttgaagcagttgttggagatt 1455589  T
Q  120 ttggttatgcaatgcttatggattacaaagatacccatgatactactgctgt 171  Q
    | ||||  |||| |||||||| |||||||||||||||||  |||||||||||    
T  1455590 tcggtttagcaaagcttatggcttacaaagatacccatgtcactactgctgt 1455641  T

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Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 21019662 - 21019576
Alignment:
Q  1 gggatctgctagggggattgcttacttgcattatagttgtgac---cctaagattattcaccgtgatgtgaaagctgcaaatatatt 84  Q
    ||||||||| |||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||| |||||    
T  21019662 gggatctgccagggggattgcttacttgcattatagttatgaccctcctaagattattcaccgtgatgtgaaagctgcaaacatatt 21019576  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 1436156 - 1436200
Alignment:
Q  214 tgaactaataactggaccgagggcttctgatctagcacgtcttgc 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1436156 tgaactaataactggaccgagggcttctgatctagcacgtcttgc 1436200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 21018146 - 21018100
Alignment:
Q  214 tgaactaataactggaccgagggcttctgatctagcacgtcttgcca 260  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  21018146 tgaactaataactggaccgagggcttctgacctagcacgtcttgcca 21018100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 1429546 - 1429592
Alignment:
Q  214 tgaactaataactggaccgagggcttctgatctagcacgtcttgcca 260  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||    
T  1429546 tgaactaataactggacaaagggcttttgatctagcacgtcttgcca 1429592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 171
Target Start/End: Complemental strand, 43826635 - 43826501
Alignment:
Q  37 ttgtgaccctaagattattcaccgtgatgtgaaagctgcaaatatattgttggatgagaaatttgaagcaattgttggagattttggttatgcaatgctt 136  Q
    ||||||||| || || ||||| ||||| ||||||||||| || ||||||||||||||  | ||||| ||  |||| || |||||||| |  ||||  |||    
T  43826635 ttgtgacccaaaaatcattcatcgtgacgtgaaagctgctaacatattgttggatgaagagtttgaggctgttgtgggggattttggattggcaaaactt 43826536  T
Q  137 atggattacaaagatacccatgatactactgctgt 171  Q
    ||||||||||| || ||||||| ||| ||||||||    
T  43826535 atggattacaaggacacccatgttacaactgctgt 43826501  T

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