View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1383_high_10 (Length: 338)

Name: NF1383_high_10
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1383_high_10
NF1383_high_10
[»] chr4 (17 HSPs)
chr4 (1-309)||(2714107-2714414)
chr4 (93-220)||(9268308-9268435)
chr4 (93-220)||(2681101-2681228)
chr4 (96-215)||(52327007-52327127)
chr4 (93-214)||(779871-779992)
chr4 (96-213)||(38567968-38568085)
chr4 (96-216)||(7907405-7907523)
chr4 (93-214)||(23559991-23560112)
chr4 (122-201)||(30875381-30875460)
chr4 (96-214)||(5415156-5415274)
chr4 (122-214)||(55875842-55875934)
chr4 (140-213)||(206266-206341)
chr4 (96-216)||(41377380-41377500)
chr4 (122-213)||(46382018-46382109)
chr4 (140-177)||(27757768-27757805)
chr4 (149-214)||(30052370-30052435)
chr4 (147-211)||(35359645-35359709)
[»] chr8 (9 HSPs)
chr8 (93-220)||(17312846-17312973)
chr8 (94-220)||(9682354-9682480)
chr8 (97-220)||(27594261-27594384)
chr8 (122-216)||(1156271-1156365)
chr8 (93-214)||(40278965-40279086)
chr8 (96-214)||(37479192-37479310)
chr8 (96-212)||(18227002-18227118)
chr8 (147-215)||(45251488-45251556)
chr8 (147-211)||(40713779-40713843)
[»] chr1 (15 HSPs)
chr1 (93-220)||(46823626-46823753)
chr1 (93-214)||(7900132-7900253)
chr1 (96-216)||(1035724-1035844)
chr1 (122-216)||(37457629-37457723)
chr1 (93-214)||(23571007-23571128)
chr1 (122-214)||(50428478-50428570)
chr1 (96-212)||(43496377-43496493)
chr1 (96-214)||(19993376-19993494)
chr1 (122-216)||(51613260-51613354)
chr1 (143-220)||(26707118-26707195)
chr1 (93-151)||(26723252-26723311)
chr1 (97-203)||(10574374-10574480)
chr1 (147-213)||(19322821-19322887)
chr1 (122-216)||(47394377-47394471)
chr1 (145-214)||(19466327-19466396)
[»] chr7 (13 HSPs)
chr7 (124-218)||(8404754-8404848)
chr7 (93-215)||(48252886-48253009)
chr7 (122-216)||(43692549-43692643)
chr7 (96-203)||(36725802-36725909)
chr7 (120-209)||(49080769-49080857)
chr7 (122-214)||(49081237-49081329)
chr7 (148-214)||(23869939-23870005)
chr7 (122-214)||(43598826-43598918)
chr7 (120-203)||(46700864-46700947)
chr7 (96-214)||(44396388-44396506)
chr7 (149-203)||(38346439-38346493)
chr7 (96-185)||(32485437-32485526)
chr7 (140-216)||(12879278-12879354)
[»] chr6 (6 HSPs)
chr6 (95-220)||(19763518-19763644)
chr6 (93-220)||(19789206-19789334)
chr6 (122-200)||(13685400-13685478)
chr6 (122-191)||(30775356-30775425)
chr6 (122-203)||(2844147-2844228)
chr6 (115-204)||(10682518-10682607)
[»] chr5 (8 HSPs)
chr5 (93-214)||(39060173-39060294)
chr5 (93-220)||(9959311-9959438)
chr5 (148-216)||(4925098-4925166)
chr5 (115-214)||(23089325-23089424)
chr5 (122-212)||(14913466-14913556)
chr5 (122-212)||(34769571-34769661)
chr5 (93-178)||(14947660-14947745)
chr5 (148-203)||(16280927-16280982)
[»] chr3 (17 HSPs)
chr3 (117-214)||(1995577-1995674)
chr3 (93-214)||(15877734-15877855)
chr3 (111-220)||(40793167-40793276)
chr3 (124-220)||(35846164-35846259)
chr3 (96-214)||(36177214-36177332)
chr3 (122-212)||(35424138-35424228)
chr3 (93-214)||(52313860-52313981)
chr3 (93-214)||(53464270-53464391)
chr3 (97-216)||(35496088-35496207)
chr3 (96-214)||(4489847-4489965)
chr3 (122-214)||(49786948-49787040)
chr3 (140-195)||(20809642-20809697)
chr3 (125-214)||(49644364-49644453)
chr3 (171-214)||(45240856-45240899)
chr3 (122-189)||(45266899-45266966)
chr3 (141-213)||(14898461-14898533)
chr3 (150-214)||(29096142-29096206)
[»] chr2 (13 HSPs)
chr2 (93-184)||(7395455-7395546)
chr2 (93-216)||(9104547-9104670)
chr2 (122-215)||(32914457-32914551)
chr2 (96-213)||(6858971-6859088)
chr2 (122-214)||(18565740-18565832)
chr2 (147-211)||(39375711-39375775)
chr2 (98-181)||(3739897-3739980)
chr2 (122-203)||(14657523-14657603)
chr2 (94-214)||(8443224-8443344)
chr2 (146-197)||(8320451-8320502)
chr2 (147-214)||(8322172-8322239)
chr2 (96-215)||(38609917-38610036)
chr2 (122-214)||(40095791-40095883)
[»] scaffold0015 (1 HSPs)
scaffold0015 (96-214)||(56588-56706)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 2714107 - 2714414
Alignment:
Q  1 tttacattaaaatcaaaattttgaacgtcattattcgatattttgatcggtggaattggtcctccaaatttttcgattctttagtcggataccacccaca 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2714107 tttacattaaaatcaaaattttgaacgtcattattcggtattttggtcggtggaattggtcctccaaatttttcgattctttagtcggatgccacccaca 2714206  T
Q  101 tccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaa 200  Q
    |||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  2714207 tccatgccacttacatgggttgtataaatggatctcacgtaatactttatattatttcatactttccaattatttaaatcatttaactatattttttaaa 2714306  T
Q  201 tatcaataccactcttacaatgggtcctaaattccatatttataaaaaatggttgtgattatacaatgtcgtatgattatacattttatatatttttgga 300  Q
    |||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2714307 tatcgataccactcttacaat-gatcctaaattccatatttataaaaaatggttgtgattatacaatgtcgtatgattatacattttatatatttttgga 2714405  T
Q  301 tactttaac 309  Q
    |||||||||    
T  2714406 tactttaac 2714414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 9268308 - 9268435
Alignment:
Q  93 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 191  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||| ||||| |    
T  9268308 cacccacatccatgccactctacatgggtggtataaatgggtccca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactaca 9268406  T
Q  192 ttttttaaatatcaataccactcttacaa 220  Q
    |||| |||| ||| |||||| ||||||||    
T  9268407 ttttctaaacatccataccattcttacaa 9268435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 2681228 - 2681101
Alignment:
Q  93 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 191  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||| ||||| |    
T  2681228 cacccacatccatgccactctacatgggtggtataaatgggtccca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactaca 2681130  T
Q  192 ttttttaaatatcaataccactcttacaa 220  Q
    | || |||| ||| |||||| ||||||||    
T  2681129 tcttctaaacatccataccattcttacaa 2681101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 52327127 - 52327007
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    |||||||||||||||  | |||  | ||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||| ||||| |||||    
T  52327127 ccacatccatgccacccatatgagtagtataaatgggtcccacataatattttatattacttcacacttttcaattatttaaatcactcaactacatttt 52327028  T
Q  196 t-taaatatcaataccactct 215  Q
    | |||||||| ||||||||||    
T  52327027 tctaaatatccataccactct 52327007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 779871 - 779992
Alignment:
Q  93 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 192  Q
    ||||||||||||| ||||  | |||| | ||||||||||||| ||| |||||| |||||||| |||| | ||||| |||||||||| |||| ||||||||    
T  779871 cacccacatccataccacccatatgggtggtataaatgggtctcacataatacattatattacttcacatttttccattatttaaaccactcaactatat 779970  T
Q  193 tttttaaatatcaataccactc 214  Q
    ||| |||||||| |||||||||    
T  779971 tttctaaatatccataccactc 779992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 213
Target Start/End: Complemental strand, 38568085 - 38567968
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    ||||||||||||||||||||| | | |||| |||||  | |||  ||||  |||||||| ||| ||||||||||||||||||| |||| ||||| |||||    
T  38568085 ccacatccatgccacttacattggtggtatgaatggacctcactcaatatattatattacttcttacttttcaattatttaaaccactcaactacatttt 38567986  T
Q  196 ttaaatatcaataccact 213  Q
    ||||||||  ||||||||    
T  38567985 ttaaatattcataccact 38567968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 7907523 - 7907405
Alignment:
Q  96 ccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattt 194  Q
    |||||||||||||||| |  |||| | ||||||||||||||||| |||||||||||| |   ||| ||||| |||||||||||| |||| ||||| ||||    
T  7907523 ccacatccatgccactctttatgggtggtataaatgggtcccacataatactttatact---tcacactttccaattatttaaaccactcaactacattt 7907427  T
Q  195 tttaaatatcaataccactctt 216  Q
    | |||||||| ||| |||||||    
T  7907426 tctaaatatccatatcactctt 7907405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 23559991 - 23560112
Alignment:
Q  93 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 192  Q
    ||||||||||||||||||  | |||| | ||||||||||| ||||| |||||  ||| |||| || | ||||| |||||||||||| |||| ||||| ||    
T  23559991 cacccacatccatgccacccaaatgggtggtataaatgggacccacataatatattacattactttacactttccaattatttaaaccactcaactacat 23560090  T
Q  193 tttttaaatatcaataccactc 214  Q
    ||| |||||||| || ||||||    
T  23560091 tttctaaatatccatgccactc 23560112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 30875460 - 30875381
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaat 201  Q
    ||||||||| |||||||  ||||| ||||||||||| | ||||  ||||||||||||||||| ||||||||||| |||||    
T  30875460 gtataaatgagtcccactgaatacattatattattttaaacttcccaattatttaaatcactaaactatattttctaaat 30875381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 5415156 - 5415274
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    |||||||||||||||  | |||||| |||||||||||  |||| |||||  |||||||| || | ||||  ||||||||||| ||||| ||||| |||||    
T  5415156 ccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactttacacttcccaattatttaactcactcaactacatttt 5415255  T
Q  196 ttaaatatcaataccactc 214  Q
     |||||||  |||||||||    
T  5415256 ctaaatattcataccactc 5415274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 55875934 - 55875842
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    ||||||||||||||||| |||||  |||||||| |||| |  | ||||||| ||||| |||| ||||| |||||||||||||  |||||||||    
T  55875934 gtataaatgggtcccacataataaattatattacttcacatctctcaattacttaaaccactcaactacattttttaaatattcataccactc 55875842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 206341 - 206266
Alignment:
Q  140 taatactttatattatttcatacttttcaattatttaaatcacttaactatatt--ttttaaatatcaataccact 213  Q
    ||||| |||||||||||||||| ||||||||||||||||  | | |||||||||  ||||||||||| ||| ||||    
T  206341 taatattttatattatttcatatttttcaattatttaaacaattcaactatatttcttttaaatatctataacact 206266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 41377500 - 41377380
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    |||| |||||| ||| || |||||| |||||||||||||  || |||||  |||||||| |||  |||| |||||||||| ||  ||| ||||| |||||    
T  41377500 ccacttccatgtcacctatatggatagtataaatgggtcttacataatatattatattacttcccacttctcaattattttaactactcaactacatttt 41377401  T
Q  196 ttaaatatcaataccactctt 216  Q
    ||||||||  |||| ||||||    
T  41377400 ttaaatattcatactactctt 41377380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 46382109 - 46382018
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccact 213  Q
    ||||||||||  || || |||||  |||||||| |||| |||| ||||||||||||| ||||  ||||||||||| ||||||  ||||||||    
T  46382109 gtataaatggaccctacttaatatattatattagttcacacttctcaattatttaaaccactccactatatttttcaaatattcataccact 46382018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 27757768 - 27757805
Alignment:
Q  140 taatactttatattatttcatacttttcaattatttaa 177  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  27757768 taatattttatattattttatacttttcaattatttaa 27757805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 30052435 - 30052370
Alignment:
Q  149 atattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    |||||| |||||| |||| ||||||||||| || | ||||| |||||||||||||| |||| ||||    
T  30052435 atattacttcatattttttaattatttaaaccaatcaactacattttttaaatatccatactactc 30052370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 35359645 - 35359709
Alignment:
Q  147 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatacca 211  Q
    |||||||||||||||| || ||| |||||||   ||||||||| ||||| |||||||| ||||||    
T  35359645 ttatattatttcatacattccaactatttaagcaacttaactaaattttctaaatatccatacca 35359709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 17312973 - 17312846
Alignment:
Q  93 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 191  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| || |||||||||||||||| |||| |||||||||||||||||| |||| ||||| |    
T  17312973 cacccacatccatgccactctacatggatggtataaatgggtctca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactaca 17312875  T
Q  192 ttttttaaatatcaataccactcttacaa 220  Q
    | || |||||||| |||||| ||||||||    
T  17312874 tcttctaaatatccataccattcttacaa 17312846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 220
Target Start/End: Complemental strand, 9682480 - 9682354
Alignment:
Q  94 acccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 192  Q
    |||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||| ||||| ||    
T  9682480 acccacatccatgccactctacatgggtggtataaatgggtccca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactacat 9682382  T
Q  193 tttttaaatatcaataccactcttacaa 220  Q
    ||| |||| ||| |||||| ||||||||    
T  9682381 tttctaaacatccataccattcttacaa 9682354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 97 - 220
Target Start/End: Complemental strand, 27594384 - 27594261
Alignment:
Q  97 cacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    ||||||||||||||| ||||||| | | |||||||||||||||||||| ||||||||||||||| || || |||||||||||| |||| ||||| |||||    
T  27594384 cacatccatgccactctacatgg-tggaataaatgggtcccacgtaattctttatattatttcacaccttccaattatttaaaccactcaactacatttt 27594286  T
Q  196 ttaaatatcaataccactcttacaa 220  Q
     |||||||  |||||||||||||||    
T  27594285 ctaaatattcataccactcttacaa 27594261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 1156365 - 1156271
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 216  Q
    ||||||||||||| ||||||||||  |||||||||||| ||||  |||||||||||| |||| |||||||| || |||||||| |||||||||||    
T  1156365 gtataaatgggtctcacgtaatacaatatattatttcacacttcccaattatttaaaccactaaactatatcttctaaatatccataccactctt 1156271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 40279086 - 40278965
Alignment:
Q  93 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 192  Q
    ||||||||| ||||||||  | |||  | ||||||||||| ||||| |||||  |||||||| || ||||||| |||||||||||| |||| ||||| ||    
T  40279086 cacccacattcatgccacccaaatgagtggtataaatgggacccacataatatattatattactttatactttccaattatttaaaccactcaactacat 40278987  T
Q  193 tttttaaatatcaataccactc 214  Q
    ||| |||||||| |||||||||    
T  40278986 tttctaaatatccataccactc 40278965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 37479310 - 37479192
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata-ttt 194  Q
    |||||||||||||||||| |||||| |||||||||  ||| || |||||  |||||||| || | |||||||||||||||||| |||| ||||| | |||    
T  37479310 ccacatccatgccacttatatggatggtataaatgaatcc-acataatatattatattactttaaacttttcaattatttaaaccactcaactacatttt 37479212  T
Q  195 tttaaatatcaataccactc 214  Q
    |||||||||| |||| ||||    
T  37479211 tttaaatatccatactactc 37479192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 18227118 - 18227002
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    |||||||||||||||  |  ||| | ||||||| ||||||||| |||||| ||||||||  ||| ||||  |||||||||||| ||   ||||| |||||    
T  18227118 ccacatccatgccacccatttgggtggtataaacgggtcccacataatacattatattacctcacacttcccaattatttaaaccatccaactacatttt 18227019  T
Q  196 ttaaatatcaataccac 212  Q
    ||||||||| |||||||    
T  18227018 ttaaatatccataccac 18227002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 45251488 - 45251556
Alignment:
Q  147 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactct 215  Q
    |||| |||||||| | ||||| |||||||||| ||||||| || |||||||||||||| |||| |||||    
T  45251488 ttatgttatttcacatttttctattatttaaaccacttaaatacattttttaaatatccatactactct 45251556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 40713779 - 40713843
Alignment:
Q  147 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatacca 211  Q
    ||||||||||||| |||||| |||||||||||  | | ||| | |||||||||||||| ||||||    
T  40713779 ttatattatttcacacttttaaattatttaaacaagtaaaccacattttttaaatatctatacca 40713843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 46823753 - 46823626
Alignment:
Q  93 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 191  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||| ||||| |    
T  46823753 cacccacatccatgccactctacatgggtggtataaatgggtccca-gtaatactttatattacttcacacttttcaattatttaaaccactcaactaca 46823655  T
Q  192 ttttttaaatatcaataccactcttacaa 220  Q
    |||| |||| ||| |||||| ||||||||    
T  46823654 ttttctaaacatccataccattcttacaa 46823626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 7900132 - 7900253
Alignment:
Q  93 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 192  Q
    |||||||||||||||||| || |||||| ||||||||||| ||||| |||||  |||||||| || ||||||  |||||||||||| |||| ||||| ||    
T  7900132 cacccacatccatgccacctaaatggatcgtataaatgggacccacataatatattatattactttatacttcccaattatttaaaccactcaactacat 7900231  T
Q  193 tttttaaatatcaataccactc 214  Q
    ||| |||||||| |||||||||    
T  7900232 tttctaaatatccataccactc 7900253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 1035724 - 1035844
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    |||||||||| ||||| | |||| | ||||| |||||||||| |||||||  |||||||||||| |||| ||||||||||||| |||| |||||||||||    
T  1035724 ccacatccataccactcatatgggtggtatatatgggtcccatgtaatacaatatattatttcacacttctcaattatttaaaccactaaactatatttt 1035823  T
Q  196 ttaaatatcaataccactctt 216  Q
     |||||||  |||||||||||    
T  1035824 ctaaatatacataccactctt 1035844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 37457629 - 37457723
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 216  Q
    ||||||||||||||||||||||||  |||||||||||| |||| ||||||||| ||| |||| ||||||||||| |||||||  |||||||||||    
T  37457629 gtataaatgggtcccacgtaatacaatatattatttcacacttctcaattattaaaaccactcaactatattttctaaatatacataccactctt 37457723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 23571128 - 23571007
Alignment:
Q  93 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 192  Q
    ||||| ||||||| ||||  | |||| | ||||||||||||||||| |||||| |||||||| |||| | ||||| ||||||||||  ||| ||||||||    
T  23571128 cacccgcatccataccacccatatgggtggtataaatgggtcccacataatacattatattacttcacatttttccattatttaaacaactcaactatat 23571029  T
Q  193 tttttaaatatcaataccactc 214  Q
    |||||||||||| |||||||||    
T  23571028 tttttaaatatccataccactc 23571007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 50428570 - 50428478
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    |||||||||| || |||| ||||  |||||||| |||| |||| |||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  50428570 gtataaatggatctcacgcaataaattatattacttcacacttctcaattatttaaatcactcaactatattttctaaatatccataccactc 50428478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 43496377 - 43496493
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    |||||||||||||||  |  ||||| ||||||| ||||||||| |||||| ||||||||  ||| |||| |||||||||||||  | | ||||| |||||    
T  43496377 ccacatccatgccacccatttggatggtataaacgggtcccacataatacattatattacctcacacttctcaattatttaaactattcaactacatttt 43496476  T
Q  196 ttaaatatcaataccac 212  Q
    ||||||||| |||||||    
T  43496477 ttaaatatccataccac 43496493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 19993494 - 19993376
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    |||||||||||| ||| | |||| | ||||| |||||  |||| |||||  |||||||| || | |||||| ||||||||||| |||| |||||||||||    
T  19993494 ccacatccatgcaactcaaatgggtggtatagatgggatccacataatatattatattactttacactttttaattatttaaaccactcaactatatttt 19993395  T
Q  196 ttaaatatcaataccactc 214  Q
     |||||||| |||||||||    
T  19993394 ctaaatatccataccactc 19993376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 51613260 - 51613354
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 216  Q
    |||||||||| |||||| ||||| ||||||||| |||| ||||| |||||||||||| |||| ||||| ||||| ||||||   |||||||||||    
T  51613260 gtataaatggatcccacataataatttatattacttcacactttccaattatttaaaccactcaactacattttctaaatactcataccactctt 51613354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 26707195 - 26707118
Alignment:
Q  143 tactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactcttacaa 220  Q
    |||||||||||| |||| |||||||||||||||||| || | ||||| ||||| |||||||  |||||||||||||||    
T  26707195 tactttatattagttcacacttttcaattatttaaaccattcaactacattttctaaatattcataccactcttacaa 26707118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 26723311 - 26723252
Alignment:
Q  93 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttata 151  Q
    ||||||||||||||||||| ||||||| | |||||||| || ||||||||||||||||||    
T  26723311 cacccacatccatgccactctacatgggtggtataaataggccccacgtaatactttata 26723252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 10574480 - 10574374
Alignment:
Q  97 cacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttt 196  Q
    ||||||||||||||| | ||   | ||||||||| || |||| |||||   ||||||| |||| | || |||||||||||||||||| || |||||||||    
T  10574480 cacatccatgccactaatataagtggtataaatgagttccacataatataatatattacttcacatttctcaattatttaaatcactcaattatattttt 10574381  T
Q  197 taaatat 203  Q
    |||||||    
T  10574380 taaatat 10574374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 19322887 - 19322821
Alignment:
Q  147 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccact 213  Q
    |||||||| | ||||||| ||||||||||||| || | ||||| |||||||||||||| ||||||||    
T  19322887 ttatattactacatacttctcaattatttaaaccattcaactacattttttaaatatccataccact 19322821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 47394377 - 47394471
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 216  Q
    |||||||||||| |||| |||||| |||||||| |||| ||||  ||||||||||||  |||   ||| |||||||||||||  |||||||||||    
T  47394377 gtataaatgggttccacataatacattatattacttcacacttcccaattatttaaactactcgtctacattttttaaatattcataccactctt 47394471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 19466327 - 19466396
Alignment:
Q  145 ctttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    ||||||| |||| || |||| |||||||||||||  |||  |||||||||||||||||||||||| ||||    
T  19466327 ctttataatattacacacttctcaattatttaaactactccactatattttttaaatatcaatactactc 19466396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 8404754 - 8404848
Alignment:
Q  124 ataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactcttac 218  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| || || |||||||||||||| | |||||||||||    
T  8404754 ataaatgggtcccacgtaatactttatattatttcacactttccaattatttaaaccactcaattacattttttaaatatccacaccactcttac 8404848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 48253009 - 48252886
Alignment:
Q  93 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 192  Q
    ||||||||||||||||||  | |||  | ||||||||||||||||  ||||| ||||||||| |||| ||||| |||||||||||| |||| ||||| ||    
T  48253009 cacccacatccatgccacccatatgagtagtataaatgggtcccatataatattttatattacttcacactttccaattatttaaaccactcaactacat 48252910  T
Q  193 tttt-taaatatcaataccactct 215  Q
    |||| |||||||| ||||||||||    
T  48252909 ttttctaaatatccataccactct 48252886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 43692643 - 43692549
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 216  Q
    |||||||| |||||||| |||||| ||||||||||||| |||| ||||||||||||| |||| | ||| |||||||||||||  |||||||||||    
T  43692643 gtataaataggtcccacataatacattatattatttcacacttctcaattatttaaaccactcatctaaattttttaaatatttataccactctt 43692549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 203
Target Start/End: Complemental strand, 36725909 - 36725802
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    |||||||||| ||||| |||||| | |||||||||| |||||| |||| ||||||||||||| | |||| ||||||||||||| |||| ||||| | |||    
T  36725909 ccacatccataccactcacatgggtggtataaatggatcccacttaattctttatattattttacacttctcaattatttaaaccactcaactacaattt 36725810  T
Q  196 ttaaatat 203  Q
     |||||||    
T  36725809 ctaaatat 36725802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 49080769 - 49080857
Alignment:
Q  120 ttgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatac 209  Q
    |||||||||||||||  || |||||  |||||||| |||| |||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  49080769 ttgtataaatgggtcttacataatatattatattacttcacacttttcaattatttaaaccactt-actacattttttaaatatcaatac 49080857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 49081329 - 49081237
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    ||||||||||||| ||  |||||| ||||||||||| ||| ||||||||||||||||||| | | ||| ||||| |||||||  |||||||||    
T  49081329 gtataaatgggtctcatataatacattatattattttatatttttcaattatttaaatcattcatctacattttctaaatatttataccactc 49081237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 23870005 - 23869939
Alignment:
Q  148 tatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    ||||||| |||| ||||||||||| ||||||  ||||||||||||||| |||||||| |||||||||    
T  23870005 tatattacttcacacttttcaattttttaaactacttaactatattttctaaatatccataccactc 23869939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 43598918 - 43598826
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    ||||||||||  || || |||||  |||||||| |||| |||| ||||||||||||| |||| |||||||||||| ||||||  |||||||||    
T  43598918 gtataaatggaccctacttaatatattatattagttcacacttctcaattatttaaaccactcaactatatttttcaaatattcataccactc 43598826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 46700947 - 46700864
Alignment:
Q  120 ttgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 203  Q
    |||||||||||| || ||| |||| ||||||| ||||||| |||| ||||||||||||| ||||  | |||||||| |||||||    
T  46700947 ttgtataaatggctctcacttaattctttatactatttcacacttctcaattatttaaaccactatattatattttctaaatat 46700864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 44396506 - 44396388
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    |||||||||||||||  | |||||| |||||||||||  |||| |||||  |||||||| || | ||||  |||||||||||  |||| ||||| |||||    
T  44396506 ccacatccatgccacccaaatggatggtataaatgggatccacataatatattatattactttacacttcccaattatttaacccactcaactacatttt 44396407  T
Q  196 ttaaatatcaataccactc 214  Q
     |||||||  |||||||||    
T  44396406 ctaaatattcataccactc 44396388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 38346439 - 38346493
Alignment:
Q  149 atattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 203  Q
    |||||| |||||| |||| ||||||||||| |||| ||||| |||||||||||||    
T  38346439 atattacttcatattttttaattatttaaaccactcaactacattttttaaatat 38346493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 32485437 - 32485526
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcactta 185  Q
    |||||||||| ||||| | || | | |||| |||||||||||| |||||| |||||||| ||||  ||| | ||||||||||| ||||||    
T  32485437 ccacatccataccactcatatcggtggtatcaatgggtcccacataatacattatattacttcacgcttcttaattatttaaaccactta 32485526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 12879278 - 12879354
Alignment:
Q  140 taatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 216  Q
    ||||| ||||||||| |||| |||| |||||||||||||  ||  ||||||||||| |||||||  |||||| ||||    
T  12879278 taatattttatattacttcacacttctcaattatttaaacaacacaactatattttctaaatattcataccattctt 12879354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 19763518 - 19763644
Alignment:
Q  95 cccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatt 193  Q
    |||||||| |||||||| ||||||| | |||||| |||||||||||||||| ||||||||| |||| ||||| |||||||||||| ||||||| || |||    
T  19763518 cccacatctatgccactctacatgggtggtataactgggtcccacgtaatattttatattacttcacactttccaattatttaaaccacttaattacatt 19763617  T
Q  194 ttttaaatatcaataccactcttacaa 220  Q
    || |||||||  |||||||||||||||    
T  19763618 ttctaaatattcataccactcttacaa 19763644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 19789206 - 19789334
Alignment:
Q  93 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 191  Q
    |||||||||| ||| |||| ||||||| | |||||| |||||||||||||||| |||||||||   || |||||||||||||||||||||||||| || |    
T  19789206 cacccacatctatgtcactctacatgggtggtataactgggtcccacgtaatattttatattacgccacacttttcaattatttaaatcacttaattaca 19789305  T
Q  192 ttttttaaatatcaataccactcttacaa 220  Q
    |||| |||||||  ||| |||||||||||    
T  19789306 ttttctaaatattcatatcactcttacaa 19789334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 13685400 - 13685478
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaa 200  Q
    ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |||| ||||||||||| ||||    
T  13685400 gtataaatgggtcccacataatacattatattattttatacttttcaattatttaaaacactcaactatattttctaaa 13685478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 30775356 - 30775425
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 191  Q
    |||||||||||||| || |||||| |||||||| |||| |||||||||||||||||| |||| |||||||    
T  30775356 gtataaatgggtcctacataatacattatattacttcacacttttcaattatttaaaccactcaactata 30775425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 2844228 - 2844147
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 203  Q
    ||||||||| ||  ||| |||||| |||||||| |||| ||||  |||||||||||| |||| ||||| |||||||||||||    
T  2844228 gtataaatgagtttcacataatacattatattacttcacacttcccaattatttaaaccactcaactacattttttaaatat 2844147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 10682607 - 10682518
Alignment:
Q  115 atggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatc 204  Q
    |||||| || |||||||  ||||| |||||  |||||||| |||| |||| ||||||||||||| |||| ||||| |||||| |||||||    
T  10682607 atggatggtttaaatggaccccacttaatatattatattacttcacacttctcaattatttaaaccactcaactacatttttcaaatatc 10682518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 39060173 - 39060294
Alignment:
Q  93 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 192  Q
    ||||||||| |||  ||| || |||| | ||||||||||||||||| |||||| |||||||| |||| ||||||| |||||||||| |||| ||||||||    
T  39060173 cacccacatacatatcacctatatgggtggtataaatgggtcccacataatacattatattacttcacacttttcgattatttaaaccactcaactatat 39060272  T
Q  193 tttttaaatatcaataccactc 214  Q
    ||| |||||||| ||| |||||    
T  39060273 tttctaaatatccatatcactc 39060294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 9959438 - 9959311
Alignment:
Q  93 cacccacatccatgccact-tacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactata 191  Q
    |||||||||||||| |||| ||||||| | |||||||||||||| ||||||||||||||| || |||| ||||| ||||||||||||  ||| ||||| |    
T  9959438 cacccacatccatgtcactctacatgggtggtataaatgggtcc-acgtaatactttatactacttcacactttccaattatttaaactactcaactaca 9959340  T
Q  192 ttttttaaatatcaataccactcttacaa 220  Q
    |||| |||||||| ||||| || ||||||    
T  9959339 ttttctaaatatccataccgctattacaa 9959311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 4925098 - 4925166
Alignment:
Q  148 tatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactctt 216  Q
    ||||||| |||| |||||||||||||||||| |||| ||||| |||||||||||||| ||| |||||||    
T  4925098 tatattacttcacacttttcaattatttaaaccactcaactacattttttaaatatccatatcactctt 4925166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 23089424 - 23089325
Alignment:
Q  115 atggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    |||||| |||||||||| |||||  |||||  ||||||||||||| | ||| ||||||||||||||||| | | | |||||||||||||  |||||||||    
T  23089424 atggatggtataaatggatcccatataatatattatattatttcacattttccaattatttaaatcactcatccacattttttaaatattcataccactc 23089325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 14913466 - 14913556
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccac 212  Q
    |||||||||||||  ||  ||||| ||||||||||| | ||||||||||||||||||  ||| ||||||||||| |||||||  |||||||    
T  14913466 gtataaatgggtcatactaaatacattatattattttacacttttcaattatttaaactactaaactatattttctaaatattcataccac 14913556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 34769661 - 34769571
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccac 212  Q
    ||||||| ||||||||| |||||| ||||||||  ||| ||||  |||||||||||| || | ||||| |||||||||||||| |||||||    
T  34769661 gtataaacgggtcccacataatacattatattacctcacacttcccaattatttaaaccattcaactacattttttaaatatccataccac 34769571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 14947660 - 14947745
Alignment:
Q  93 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaa 178  Q
    |||||||||||||| ||   | || ||| |||||||||| |||||| ||||| ||||||||| || ||||||||||||||||||||    
T  14947660 cacccacatccatgtcatccatatagatggtataaatggatcccacataatattttatattactttatacttttcaattatttaaa 14947745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 16280927 - 16280982
Alignment:
Q  148 tatattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 203  Q
    ||||||| |||| |||||||||||||| |||||||  ||||||||||| |||||||    
T  16280927 tatattacttcacacttttcaattattcaaatcacacaactatattttctaaatat 16280982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 1995577 - 1995674
Alignment:
Q  117 ggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    |||| ||||||||||||||||| |||||| |||||||| |||| ||||  |||||||||||| |||||||||| ||||| |||||||| |||||||||    
T  1995577 ggatggtataaatgggtcccacataatacattatattacttcacacttcccaattatttaaaccacttaactacattttctaaatatccataccactc 1995674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 15877734 - 15877855
Alignment:
Q  93 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 192  Q
    ||||| ||||||| ||||  | |||| | ||||||||||||||||| |||||| |||||||| |||| | ||||| |||||||||| |||| ||||||||    
T  15877734 cacccccatccataccacccatatgggtggtataaatgggtcccacataatacattatattacttcacatttttccattatttaaaccactcaactatat 15877833  T
Q  193 tttttaaatatcaataccactc 214  Q
    ||| |||||||| |||||||||    
T  15877834 tttctaaatatccataccactc 15877855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 40793167 - 40793276
Alignment:
Q  111 ttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatacc 210  Q
    |||||||| | |||||||||| | |||||||||||||||||||| |||  |||||||||||||||||| |||| ||||| ||||| |||||||  ||| |    
T  40793167 ttacatgggtggtataaatggattccacgtaatactttatattacttctcacttttcaattatttaaaccactcaactacattttataaatattcatatc 40793266  T
Q  211 actcttacaa 220  Q
    ||||||||||    
T  40793267 actcttacaa 40793276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 35846164 - 35846259
Alignment:
Q  124 ataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactcttacaa 220  Q
    ||||||||||| |||||||||||||||||||||| | |||||||||||||||||| || | ||||| ||||| ||||||||  ||||||||||||||    
T  35846164 ataaatgggtctcacgtaatactttatattattttacacttttcaattatttaaaccattcaactacattttctaaatatc-ctaccactcttacaa 35846259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 36177332 - 36177214
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    |||||| |||||||| || |||||| ||||||||||||||||| |||||  |||||||| |||| ||||| ||||||||| || |||| | ||| |||||    
T  36177332 ccacattcatgccacctatatggatggtataaatgggtcccacataatagattatattacttcacactttccaattatttgaaccactcatctacatttt 36177233  T
Q  196 ttaaatatcaataccactc 214  Q
    ||||||||  |||||||||    
T  36177232 ttaaatattcataccactc 36177214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 35424138 - 35424228
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccac 212  Q
    ||||||||||||| ||| |||||| |||||||| |||| | |||||||||||||||| |||| ||||| ||||| |||||||| |||||||    
T  35424138 gtataaatgggtctcacataatacattatattacttcacatttttcaattatttaaaccactcaactacattttctaaatatccataccac 35424228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 52313860 - 52313981
Alignment:
Q  93 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 192  Q
    ||||||||||||||||||  | |||| | ||||||||||| ||||| || ||| |||||||| || | |||||  | ||||||||| |||| ||||| ||    
T  52313860 cacccacatccatgccacccaaatgggtggtataaatgggacccacatattacattatattactttacactttctagttatttaaaccactcaactacat 52313959  T
Q  193 tttttaaatatcaataccactc 214  Q
    ||| |||||||| |||||||||    
T  52313960 tttctaaatatccataccactc 52313981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 53464270 - 53464391
Alignment:
Q  93 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 192  Q
    ||||||||||||||||||  | |||| | ||||||||||| ||||| || ||| |||||||| || | |||||  | ||||||||| |||| ||||| ||    
T  53464270 cacccacatccatgccacccaaatgggtggtataaatgggacccacatattacattatattactttacactttctagttatttaaaccactcaactacat 53464369  T
Q  193 tttttaaatatcaataccactc 214  Q
    ||| |||||||| |||||||||    
T  53464370 tttctaaatatccataccactc 53464391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 35496088 - 35496207
Alignment:
Q  97 cacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttt 196  Q
    ||||||| |||||| || |||  | |||||||||||||| || |||||  |||||||| |||| |||| |||||||||||||||| | ||||| ||||||    
T  35496088 cacatccttgccacctatatgagtggtataaatgggtcctacataatatattatattacttcacacttctcaattatttaaatcattcaactacattttt 35496187  T
Q  197 taaatatcaataccactctt 216  Q
    | ||| || |||| ||||||    
T  35496188 ttaatttccatactactctt 35496207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 4489965 - 4489847
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    ||||||||||| |||||| |||||| ||||||||||| | ||  |||||  ||||||||||| |||  || |||||||||| | |||| || ||||||||    
T  4489965 ccacatccatgtcacttatatggatagtataaatgggacacatataatatattatattattttatatattccaattatttataccactcaattatatttt 4489866  T
Q  196 ttaaatatcaataccactc 214  Q
     |||||||  |||||||||    
T  4489865 ataaatatttataccactc 4489847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 49786948 - 49787040
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    ||||||||||| | ||  |||||  |||||||||||| ||| | ||||||||||||| |||| ||||||||||| |||||||  |||||||||    
T  49786948 gtataaatgggactcatataatatattatattatttcttacatctcaattatttaaaccactcaactatattttataaatattcataccactc 49787040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 20809642 - 20809697
Alignment:
Q  140 taatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    ||||| ||||||||| ||||||||||| |||||||||||  |||||||||||||||    
T  20809642 taatattttatattacttcatactttttaattatttaaacaacttaactatatttt 20809697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 214
Target Start/End: Complemental strand, 49644453 - 49644364
Alignment:
Q  125 taaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    |||||||  ||||| |||||  |||||||| |||| |||| ||||||||||||| |||| ||||| |||||| ||||||| || ||||||    
T  49644453 taaatggaccccacttaatatattatattacttcacacttctcaattatttaaaccactcaactacatttttcaaatatccatgccactc 49644364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 45240899 - 45240856
Alignment:
Q  171 tatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    |||||||| ||||||||||||||||| ||||||| |||||||||    
T  45240899 tatttaaaccacttaactatatttttcaaatatctataccactc 45240856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 45266966 - 45266899
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaacta 189  Q
    ||||||||||||| |||  ||||| ||||||||||||| |||| ||||| ||||||| |||| |||||    
T  45266966 gtataaatgggtcacaccgaatacattatattatttcacacttctcaatcatttaaaccactaaacta 45266899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 14898533 - 14898461
Alignment:
Q  141 aatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccact 213  Q
    ||||| ||||||||||| | | ||||||||| |||||| |||| ||||| ||||| |||||||  ||||||||    
T  14898533 aatacattatattattttacatttttcaattgtttaaaccactaaactacattttctaaatattcataccact 14898461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 29096142 - 29096206
Alignment:
Q  150 tattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    ||||| |||| | |||||||||||||||| |||| ||||| ||| |||||||||  |||||||||    
T  29096142 tattacttcacatttttcaattatttaaaccactcaactacattatttaaatattcataccactc 29096206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 7395546 - 7395455
Alignment:
Q  93 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcactt 184  Q
    |||||| |||||||||||| | |||| | ||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||||| |||||    
T  7395546 cacccatatccatgccactcatatgggtagtataaatgggtcccacctaatattttatattacttcacacttttcaattatttaaaccactt 7395455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 9104547 - 9104670
Alignment:
Q  93 cacccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatat 192  Q
    |||| ||||||||  |||| | |||| | ||||||||||||| ||  ||||| |||||||||||||| | || ||||||||||||| |||| ||||| ||    
T  9104547 cacctacatccatctcactcatatgggtggtataaatgggtctcatctaatattttatattatttcacaattctcaattatttaaaccactcaactacat 9104646  T
Q  193 tttttaaatatcaataccactctt 216  Q
    |||||||||||| |||||||||||    
T  9104647 tttttaaatatctataccactctt 9104670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 32914551 - 32914457
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttt-taaatatcaataccactct 215  Q
    ||||||||||||||||  ||||| ||||||||| |||| |||||||||||||||||| |||| ||||| |||||| |||||||| ||||||||||    
T  32914551 gtataaatgggtcccatataatattttatattacttcacacttttcaattatttaaaccactcaactacatttttctaaatatccataccactct 32914457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 213
Target Start/End: Original strand, 6858971 - 6859088
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    |||||||||| ||||  | |||| | ||||||||||||||||||||||||  ||||||| |||| ||||  |||||||||||| |||| |||||||||||    
T  6858971 ccacatccataccacccatatgggtggtataaatgggtcccacgtaatacaatatattacttcacacttcccaattatttaaaccactaaactatatttt 6859070  T
Q  196 ttaaatatcaataccact 213  Q
     |||||||| || |||||    
T  6859071 ctaaatatccatgccact 6859088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 18565832 - 18565740
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    ||||||||||||| ||  |||||| |||||||| ||   |||| |||||||||||||| ||| ||||| |||||||||||||| |||||||||    
T  18565832 gtataaatgggtctcatataatacattatattactttcgacttctcaattatttaaatgactcaactacattttttaaatatccataccactc 18565740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 39375775 - 39375711
Alignment:
Q  147 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaatacca 211  Q
    |||||||| |||||| ||| |||||||||||| |||| |||||||||||||||||||| ||||||    
T  39375775 ttatattacttcatattttccaattatttaaaccactcaactatattttttaaatatccatacca 39375711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 3739980 - 3739897
Alignment:
Q  98 acatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatca 181  Q
    |||||||  ||| ||| |||||| |||||||| |||| ||| |||||| ||||||||||| ||| |||||||||||||||||||    
T  3739980 acatccacaccatttatatggatggtataaataggtctcacataatacattatattattttatatttttcaattatttaaatca 3739897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 14657603 - 14657523
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatat 203  Q
    |||||||||| || ||| |||||| ||||||||||||| ||||| |||||||||||| |||| ||||| ||||| |||||||    
T  14657603 gtataaatgg-tcacacataatacattatattatttcacactttccaattatttaaaccactcaactacattttctaaatat 14657523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 8443344 - 8443224
Alignment:
Q  94 acccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatt 193  Q
    |||||||||||| ||||||| ||| || |||||||| |  ||||| ||||  |||||| ||||    |||||  |||||||||||  ||| || ||||||    
T  8443344 acccacatccataccacttatatgaatggtataaatagaccccacttaattttttataatattattcactttctaattatttaaactactcaattatatt 8443245  T
Q  194 ttttaaatatcaataccactc 214  Q
    |||||||||||||||| ||||    
T  8443244 ttttaaatatcaatactactc 8443224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 8320502 - 8320451
Alignment:
Q  146 tttatattatttcatacttttcaattatttaaatcacttaactatatttttt 197  Q
    ||||||||| ||||| | |||||||||||||||| ||| |||||||||||||    
T  8320502 tttatattacttcattcatttcaattatttaaataactcaactatatttttt 8320451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 8322239 - 8322172
Alignment:
Q  147 ttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    |||||||| |||| |||||||||||||||||| |||| || || |||||| ||||||  |||||||||    
T  8322239 ttatattacttcacacttttcaattatttaaaccactcaattacatttttcaaatattcataccactc 8322172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 38610036 - 38609917
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    |||||||||| |||| || || ||| |||||||||| || |||  ||||  ||||||||||| | |||||   |||||||||| |||| || ||||||||    
T  38610036 ccacatccataccacctatattgatggtataaatggatctcactgaatatattatattattttacactttcttattatttaaaccactcaattatatttt 38609937  T
Q  196 ttaaatatcaataccactct 215  Q
     |||||||| |||| |||||    
T  38609936 ctaaatatccatactactct 38609917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 40095883 - 40095791
Alignment:
Q  122 gtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatattttttaaatatcaataccactc 214  Q
    ||||||||||  ||||  |||||  |||||||| || | |||| |||||||||||||  ||| ||||| |||||||||||||  |||||||||    
T  40095883 gtataaatggaccccatctaatatattatattactttacacttctcaattatttaaactactcaactacattttttaaatattcataccactc 40095791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 56706 - 56588
Alignment:
Q  96 ccacatccatgccacttacatggattgtataaatgggtcccacgtaatactttatattatttcatacttttcaattatttaaatcacttaactatatttt 195  Q
    ||||||||||||||   | |||||| ||||||||||| ||||| |||||  |||||||| || | |||| ||||||||||||| |||| ||||| |||||    
T  56706 ccacatccatgccatccaaatggatggtataaatgggacccacataatatattatattactttacacttctcaattatttaaaccactcaactacatttt 56607  T
Q  196 ttaaatatcaataccactc 214  Q
     |||||||| |||||||||    
T  56606 ctaaatatccataccactc 56588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University