View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1383_high_15 (Length: 252)
Name: NF1383_high_15
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1383_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 39091858 - 39091623
Alignment:
| Q |
4 |
cttttcattgcaaggtgtaaacaagaaacaaacaagaggttctgagaaccgaggacaactactactcctatagtagcatttgtgatgtatggacacgact |
103 |
Q |
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| T |
39091858 |
cttttcattgcaaggtgtaaacaagaaacaaacaagaggttctgagaaccgaggacaactactactcctatagtagcatttgtgatgtattgacacgact |
39091759 |
T |
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| Q |
104 |
agcaaacaacacgagacctccgtagtaaacaaaagtaattagtcgaagttaagctaaactctaatatttaattcaatataacaatatcttaaaactgtcg |
203 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39091758 |
agcaaacaacacgagacctcagtagtaaacaaaagtaattagtcgaagttaagctaaactctaatatttaattcaatataacaatatcttaaaactgtcg |
39091659 |
T |
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| Q |
204 |
aggaaagtacaacaacaaatgtctctgactgaagaa |
239 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
39091658 |
aggaaagtgcaacaacaaatgtctctgactgaagaa |
39091623 |
T |
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