View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1383_high_18 (Length: 251)
Name: NF1383_high_18
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1383_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 54275040 - 54274798
Alignment:
| Q |
1 |
tcagaattctcaatttcaagcaaatacagtacaaacaagacaagactgttaatgttattgtcttgtcaatattgcaactgattcccactctaaactacat |
100 |
Q |
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| T |
54275040 |
tcagaattctcaatttcaagcaaatacagtacaaacaagacaagactgttaatgttattgtcttgtcaatatggcaactgattcccactctaaactacat |
54274941 |
T |
|
| Q |
101 |
atcacatcctgcatggaacgataacatcatcagaaaagaattttccactttcatcttgttaccacttctttctctctatcattttcattttgttaatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54274940 |
atcacatcctgcatggaacgataacatcatcagaaaaaaaatttccactttcatcttgttaccacttctttctctctatcattttcattttgttaatttt |
54274841 |
T |
|
| Q |
201 |
taataaattagtaacaatgtaaaaacaccggtacagaataatc |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54274840 |
taataaattagtaacaatgtaaaaacaccggtacagaaaaatc |
54274798 |
T |
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