View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1383_high_20 (Length: 203)

Name: NF1383_high_20
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1383_high_20
NF1383_high_20
[»] chr6 (6 HSPs)
chr6 (42-104)||(32106091-32106153)
chr6 (36-104)||(32076023-32076091)
chr6 (42-105)||(32088440-32088503)
chr6 (72-104)||(32117232-32117264)
chr6 (72-104)||(32117817-32117849)
chr6 (72-104)||(32120084-32120116)


Alignment Details
Target: chr6 (Bit Score: 55; Significance: 8e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 32106091 - 32106153
Alignment:
Q  42 tgtttttatctccttaaaaatagagaacattttttcgttatttgagacggtgatgcgtgtttt 104  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  32106091 tgtttttatctccttaaaattagagaacattttttcgttatttgagacggtgatgcatgtttt 32106153  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 32076023 - 32076091
Alignment:
Q  36 gacagatgtttttatctccttaaaaatagagaacattttttcgttatttgagacggtgatgcgtgtttt 104  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||    
T  32076023 gacagatgtttttatctccttaaaattagagaacatttttttgttatttgagactgtgatgcatgtttt 32076091  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 32088440 - 32088503
Alignment:
Q  42 tgtttttatctccttaaaaatagagaacattttttcgttatttgagacggtgatgcgtgtttta 105  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||    
T  32088440 tgtttttatctccttaaaattagagaacattttttcgttatttgaaacggtgatgcatgtttta 32088503  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 32117232 - 32117264
Alignment:
Q  72 tttttcgttatttgagacggtgatgcgtgtttt 104  Q
    |||||||||||||||||||||||||| ||||||    
T  32117232 tttttcgttatttgagacggtgatgcatgtttt 32117264  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 32117817 - 32117849
Alignment:
Q  72 tttttcgttatttgagacggtgatgcgtgtttt 104  Q
    |||||||||||||||||||||||||| ||||||    
T  32117817 tttttcgttatttgagacggtgatgcatgtttt 32117849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 32120084 - 32120116
Alignment:
Q  72 tttttcgttatttgagacggtgatgcgtgtttt 104  Q
    |||||||||||||||||||||||||| ||||||    
T  32120084 tttttcgttatttgagacggtgatgcatgtttt 32120116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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