View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1383_high_6 (Length: 556)
Name: NF1383_high_6
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1383_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 30 - 544
Target Start/End: Original strand, 43892883 - 43893394
Alignment:
| Q |
30 |
acaacgaccaccaagaaaagattcacagagtggtcattttcggttgaaatttgaacatttctcaacctaattacccaattcccgttggttgcaatggtga |
129 |
Q |
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| T |
43892883 |
acaacgaccaccaagaaaagattcacagagtggtcattttcggttgaaatttgaacatttctcaacctaattacccaattcccgttggttgcaatggtga |
43892982 |
T |
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| Q |
130 |
acctaacgcgaaagataaattttactatttattaaagcaaaagataaataagggaaacaaaagtgaaaatttatgatgagtgaatatttattcacagtca |
229 |
Q |
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| T |
43892983 |
acctaacgcgaaagataaatttta---tttattaaagcaaaagataaataagggaaacaaaagtgaaaatttatgatgagtgaatatttattcacagtca |
43893079 |
T |
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| Q |
230 |
aggaaacagtaaccaattaattagcatcttagctcaaagttccttattattttccccatcatcacataaagcaccacacacttcaaagccttcttctgct |
329 |
Q |
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| T |
43893080 |
aggaaacagtaaccaattaattagcatcttagctcaaagttccttattattttccccatcatcacataaagcaccacacacttcaaagccttcttctgct |
43893179 |
T |
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| Q |
330 |
catttatgaaattcaagtacaggcaaataaggatcaatatggaaggcacggaaacttttaaaaccagcagaaatgccaagttgtttgaattgttcttcag |
429 |
Q |
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| T |
43893180 |
catttatgaaattcaagtacaggcaaataaggatcaatatggaaggcacggaaacttttaaaaccagcagaaatgccaagttgtttgaattgttcttcag |
43893279 |
T |
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| Q |
430 |
ttctgtgttttcccttggttctatacattgtcattatccatatgtcagctgccaacaatgctcttgttcttttactctcatcggtctgctccggtaacac |
529 |
Q |
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| T |
43893280 |
ttctgtgttttcccttggttctatacattgtcattatccatatgtcagctgccaacaatgctcttgttcttttactctcatcggtctgctccggtaacac |
43893379 |
T |
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| Q |
530 |
cggttcacaaagaat |
544 |
Q |
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| T |
43893380 |
cggttcacaaagaat |
43893394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 301 - 540
Target Start/End: Original strand, 43903743 - 43903982
Alignment:
| Q |
301 |
caccacacacttcaaagccttcttctgctcatttatgaaattcaagtacaggcaaataaggatcaatatggaaggcacggaaacttttaaaaccagcaga |
400 |
Q |
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|||| |||||||||||| |||||||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||| |||| |||||||||||| |
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| T |
43903743 |
caccgcacacttcaaaggcttcttctgctcatttctgaaattctagaacaggaaaataaggatcaatgtggaaggcacgaaaacgaagaaaaccagcaga |
43903842 |
T |
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| Q |
401 |
aatgccaagttgtttgaattgttcttcagttctgtgttttcccttggttctatacattgtcattatccatatgtcagctgccaacaatgctcttgttctt |
500 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| | | ||||||||||||||||||| |
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| T |
43903843 |
aatgccaagctgtttgaattgttcttcagttctgtgttttcccttagttttatacattgtcattatgaatatgtcacccgacaacaatgctcttgttctt |
43903942 |
T |
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| Q |
501 |
ttactctcatcggtctgctccggtaacaccggttcacaaa |
540 |
Q |
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| T |
43903943 |
tgactctcatcggtcagctccggtgacactggctcacaaa |
43903982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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