View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1383_low_1 (Length: 797)
Name: NF1383_low_1
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1383_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 738; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 29 - 786
Target Start/End: Original strand, 49445782 - 49446539
Alignment:
| Q |
29 |
aaaattatcaaaacaaggcataatcgaaaatacacaccaatcaggtttttcatctcctttcgattagtgtttttacttagcaacatattcatagtaaaat |
128 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
49445782 |
aaaattaccaaaacaaggcataatcgaaaatacacaccaatcaggtttttcatctcctttcgattagtgtttttccgtagcaacatattcatagtaaaat |
49445881 |
T |
|
| Q |
129 |
tcaaacctcgtctatttgtatgcagagaaactccacattacagagtgccttcaacggaaaatcacaataaaagcaaaccatatttgctctggtcaacttg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49445882 |
tcaaacctcgtctatttgtatgcagagaaactccacattacagagtgccttcaacggaaaatcacaataaaagcaaaccatatttgctctggtcaacttg |
49445981 |
T |
|
| Q |
229 |
cttaaacttaagcttgagctattacgctcttgatatgtaatagaatcctcagatctgaaacctatatgatgtgcttgtaattcttcaagaattggacatc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49445982 |
cttaaacttaagcttgagctattacgctcttgatatgtaatagaatcctcagatctgaaacctatatgatgtgcttgtaattcttcaagaattggacatc |
49446081 |
T |
|
| Q |
329 |
cagccaaaagcaacatgaaatcttgaatattaaaaaacccagattcgctgagatgaaggattttgaggcagggaagtctaatggaagtaaagcccttcac |
428 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49446082 |
cagtcaaaagcaacatgaaatcttgaatattaaaaaacccagattcgctgagatgaaggattttgaggcagggaagtctaatggaagtaaagcccttcac |
49446181 |
T |
|
| Q |
429 |
agagaaacgctgaaatttgagaacaacaagagtcttgcagctgagaatgctaataggcaatttaggaccaccaccaaacatagtatccacaaggagatca |
528 |
Q |
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| T |
49446182 |
agagaaacgctgaaatttgagaacaacaagagtcttgcagctgagaatgctaataggcaatttaggaccaccaccaaacatagtatccacaaggagatca |
49446281 |
T |
|
| Q |
529 |
atggtctcaactccgctttgtacaacatggttgacccatttgacgacatggggaaagccaatgatgccctcctcaccatatgtaatgccaaggcaaaaac |
628 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49446282 |
atggtctcaactccgctttgtacaacatggttgacccatttgacgacatggggaaagccaatgatgccctcctcaccatatgtaatgccaaggcaaaaac |
49446381 |
T |
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| Q |
629 |
ttttgatggaattacgtgaaagcaaaacagaatacacagactagctgaagcgaaaacaggcttcttggtgatatagctctgtgttgctgaagttgatagc |
728 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49446382 |
ttttgatggaattacgtgaaagcaaaacagaatacacagactcgctgaagcgaaaacaggcttcttggtgatatagctctgtgttgctgaagttgatagc |
49446481 |
T |
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| Q |
729 |
gagaactgagcaccatagatgtatccacctctttgcaaggacactagtggcaacagct |
786 |
Q |
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| T |
49446482 |
gagaactgagcaccatagatgtatccacctctttgcaaggacactagtggcaacagct |
49446539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 383 - 491
Target Start/End: Original strand, 17642084 - 17642192
Alignment:
| Q |
383 |
gaaggattttgaggcagggaagtctaatggaagtaaagcccttcacagagaaacgctgaaatttgagaacaacaagagtcttgcagctgagaatgctaat |
482 |
Q |
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|||||||||||||| || | ||||||| | ||| ||| |||||||||| ||| | | ||| | |||||||||||||||| ||||| | |||||||||| |
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| T |
17642084 |
gaaggattttgagggagaggagtctaaagaaagaaaaccccttcacagcgaacccataaaactcgagaacaacaagagtcctgcaggttagaatgctaac |
17642183 |
T |
|
| Q |
483 |
aggcaattt |
491 |
Q |
| |
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| ||||||| |
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| T |
17642184 |
aagcaattt |
17642192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 49434690 - 49434727
Alignment:
| Q |
304 |
tgtaattcttcaagaattggacatccagccaaaagcaa |
341 |
Q |
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| T |
49434690 |
tgtaaatcttctagaattggacatccagccaaaagcaa |
49434727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 49438539 - 49438572
Alignment:
| Q |
310 |
tcttcaagaattggacatccagccaaaagcaaca |
343 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
49438539 |
tcttcaagaattggacatccagccagaagcaaca |
49438572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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