View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1383_low_12 (Length: 412)
Name: NF1383_low_12
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1383_low_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 30 - 412
Target Start/End: Complemental strand, 42413089 - 42412707
Alignment:
| Q |
30 |
cttctaatatgacaggtttgagaagcttaacttacttgagcttatcaaacaataatttttcaggtagagtccaaaatctcactggactatggaatttgaa |
129 |
Q |
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| T |
42413089 |
cttctaatatgacaggtttgagaagcttaacttacttgagcttatcaaacaataacttttcaggtagagtccaaaatctcactggactatggaatttgaa |
42412990 |
T |
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| Q |
130 |
cacactagacattagttacaaccagtttttcggcaatctaccaaatcttccagtgagtttaagaaacatatatctcagccataatattttttcaggagac |
229 |
Q |
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| T |
42412989 |
cacactagacattagttacaaccagtttttcggcaatctaccaaatcttccagtgagtttaagaaacatatatctcagccataatattttttcaggagac |
42412890 |
T |
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| Q |
230 |
ataacacctcttaaggatcttatacatgtaagatggttagatataagtgacaatagactttcaggtgttataagaagggacattctctccttaagatttg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42412889 |
ataacacctcttaaggatcttatacatgtaagatggttagatataagtgacaatagactttcaggtgttataagaagggacattctctccttaagatttg |
42412790 |
T |
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| Q |
330 |
ttagtcatttaaatgtttcttataacagattcacatcgatcgatgttgttaacggacaaggagaaggacaacgacttcgtttg |
412 |
Q |
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| T |
42412789 |
ttagtcatttaaatgtttcttataacagatttacatcgatcaatgttgttaacggacaaggacaaggacaacgacttcgtttg |
42412707 |
T |
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