View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1383_low_14 (Length: 381)

Name: NF1383_low_14
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1383_low_14
NF1383_low_14
[»] scaffold0627 (1 HSPs)
scaffold0627 (30-211)||(3235-3419)
[»] chr5 (2 HSPs)
chr5 (122-223)||(37627917-37628018)
chr5 (122-223)||(37807046-37807147)
[»] chr1 (4 HSPs)
chr1 (108-223)||(33885549-33885664)
chr1 (108-223)||(33958588-33958703)
chr1 (122-222)||(41314782-41314882)
chr1 (122-202)||(22362280-22362360)
[»] chr7 (5 HSPs)
chr7 (140-222)||(2186594-2186676)
chr7 (122-223)||(19633443-19633546)
chr7 (140-211)||(1609374-1609445)
chr7 (108-211)||(21270481-21270581)
chr7 (109-211)||(48189354-48189450)
[»] chr2 (2 HSPs)
chr2 (149-220)||(19214945-19215016)
chr2 (146-194)||(35917058-35917105)
[»] chr8 (3 HSPs)
chr8 (122-202)||(7094668-7094748)
chr8 (122-202)||(7098401-7098481)
chr8 (149-223)||(29821229-29821301)
[»] chr3 (2 HSPs)
chr3 (122-202)||(8377053-8377133)
chr3 (140-223)||(11035906-11035989)
[»] scaffold0042 (2 HSPs)
scaffold0042 (81-220)||(6376-6512)
scaffold0042 (81-220)||(13788-13924)


Alignment Details
Target: scaffold0627 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 3235 - 3419
Alignment:
Q  30 gaaagccaaccctattgaagtgattctataatatggtaactacttgtacataaagcaa-----ttgaatgaagaccaagccattttttctttatcataat 124  Q
    |||||||||| ||| | |||| || || |||||||||||||||| |||||||||||||     |||||||||||||||| ||| |||  |||||||||||    
T  3235 gaaagccaactctactcaagtaatgctttaatatggtaactactagtacataaagcaaagcaattgaatgaagaccaagtcatatttg-tttatcataat 3333  T
Q  125 agtaggaagagataattatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaatacaaaata 211  Q
    | ||||   | ||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||||  |||| |||||||||||||    
T  3334 aataggcttaaatagttataaggtacactatttaataattagtataatggattttggctatataattccaaag-aaaatacaaaata 3419  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 37627917 - 37628018
Alignment:
Q  122 aatagtaggaagagataattatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaatacaaaatagttttatcac 221  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||| | |||||||    
T  37627917 aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaatgcaaaataatattatcac 37628016  T
Q  222 tc 223  Q
    ||    
T  37628017 tc 37628018  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 37807046 - 37807147
Alignment:
Q  122 aatagtaggaagagataattatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaatacaaaatagttttatcac 221  Q
    ||||||||||| | ||| ||||||| |||||||||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||| | |||||||    
T  37807046 aatagtaggaataaatagttataggttacactatttaataattaatataatgaattttggctatatacttcgaaagaaaaatacaaaataatattatcac 37807145  T
Q  222 tc 223  Q
    ||    
T  37807146 tc 37807147  T

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Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 33885664 - 33885549
Alignment:
Q  108 tttttctttatcataatagtaggaagagataattatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaatacaa 207  Q
    ||||||||||||| |||| |||| | | |||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||||||||||||||||     
T  33885664 tttttctttatcacaataataggcataaataattatagggtacactatctaataaatagtacaatggattttggctatataatttgaaagaaaaatacag 33885565  T
Q  208 aatagttttatcactc 223  Q
    |||| | |||||||||    
T  33885564 aataatattatcactc 33885549  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 33958588 - 33958703
Alignment:
Q  108 tttttctttatcataatagtaggaagagataattatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaatacaa 207  Q
    ||||||||||||| |||| |||| | | |||||||||||||||||||| |||||| ||||| |||| |||||| |||||||||||||||||||||||||     
T  33958588 tttttctttatcacaataataggcataaataattatagggtacactatctaataaatagtacaatggattttggctatataatttgaaagaaaaatacag 33958687  T
Q  208 aatagttttatcactc 223  Q
    |||| | |||||||||    
T  33958688 aataatattatcactc 33958703  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 41314782 - 41314882
Alignment:
Q  122 aatagtaggaagagataattatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaatacaaaatagttttatcac 221  Q
    ||||||||||| | ||| ||||||||||| | |||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| | |||||||    
T  41314782 aatagtaggaataaatagttatagggtaccccatttaataattaatataatgaattttggctatatactttgaaagaaaaatacaaaataatattatcac 41314881  T
Q  222 t 222  Q
    |    
T  41314882 t 41314882  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 22362360 - 22362280
Alignment:
Q  122 aatagtaggaagagataattatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaa 202  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  22362360 aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaa 22362280  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 2186676 - 2186594
Alignment:
Q  140 ttatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaatacaaaatagttttatcact 222  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| | ||||||||    
T  2186676 ttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaatacaaaataatattatcact 2186594  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 19633443 - 19633546
Alignment:
Q  122 aatagtaggaagagataattatagggtacactatttaataattagtataatgaattttgac--tatataatttgaaagaaaaatacaaaatagttttatc 219  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||| |  |||||| |||||||||||||||||||||| | |||||    
T  19633443 aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatatactttgaaagaaaaatacaaaataatattatc 19633542  T
Q  220 actc 223  Q
    ||||    
T  19633543 actc 19633546  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 1609374 - 1609445
Alignment:
Q  140 ttatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaatacaaaata 211  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||    
T  1609374 ttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaatacaaaata 1609445  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 21270481 - 21270581
Alignment:
Q  108 tttttctttatcataatagtaggaagagataattatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaatacaa 207  Q
    |||||||||||||||||| |||| | | ||| |||||||||||| |||||||||||   | ||||| |||||| ||||||| |||||||||||||||| |    
T  21270481 tttttctttatcataataataggcataaatagttatagggtacattatttaataat---tgtaatggattttggctatatactttgaaagaaaaatacta 21270577  T
Q  208 aata 211  Q
    ||||    
T  21270578 aata 21270581  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 48189354 - 48189450
Alignment:
Q  109 ttttctttatcataatagtaggaagagataattatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaatacaaa 208  Q
    ||||||||||||||||| |||| | | ||| |||||||||||||||||||||      | ||||  |||||| ||||||| |||||||||||||||||||    
T  48189354 ttttctttatcataataataggcataaatagttatagggtacactatttaat------tgtaatagattttggctatatactttgaaagaaaaatacaaa 48189447  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 19215016 - 19214945
Alignment:
Q  149 acactatttaataattagtataatgaattttgactatataatttgaaagaaaaatacaaaatagttttatca 220  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  19215016 acactatttaataattagtataatgaattttggctatataatttgaaagaaaaatacaaaataatattatca 19214945  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 35917105 - 35917058
Alignment:
Q  146 ggtacactatttaataattagtataatgaattttgactatataatttga 194  Q
    ||||||||||||||||||||||  ||||||||| | |||||||||||||    
T  35917105 ggtacactatttaataattagtggaatgaatttag-ctatataatttga 35917058  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 7094668 - 7094748
Alignment:
Q  122 aatagtaggaagagataattatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaa 202  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  7094668 aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaa 7094748  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 7098401 - 7098481
Alignment:
Q  122 aatagtaggaagagataattatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaa 202  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  7098401 aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaa 7098481  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 29821301 - 29821229
Alignment:
Q  149 acactatttaataattagtataatgaattttgactatataatttgaaagaaaaatacaaaatagttttatcactc 223  Q
    |||||||||||  ||||||||||||||||||| |||||||||||||||| ||||||||||||| | |||||||||    
T  29821301 acactatttaa--attagtataatgaattttggctatataatttgaaagtaaaatacaaaataatattatcactc 29821229  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 8377133 - 8377053
Alignment:
Q  122 aatagtaggaagagataattatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaa 202  Q
    ||||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  8377133 aatagtaggaataaatagttatagggtacactatttaataattaatataatgaattttggctatatactttgaaagaaaaa 8377053  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 11035906 - 11035989
Alignment:
Q  140 ttatagggtacactatttaataattagtataatgaattttgactatataatttgaaagaaaaatacaaaatagttttatcactc 223  Q
    ||||||| |||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||| | |||||||||    
T  11035906 ttataggatacactatataataattagtctaatggattttggctatataatttgaaagaaaaatacaaaataatattatcactc 11035989  T

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Target: scaffold0042 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 6376 - 6512
Alignment:
Q  81 aaagcaattgaatgaagaccaagccattttttctttatcataatagtaggaagagataattatagggtacactatttaataattagtataatgaattttg 180  Q
    ||||||||||||||||||||||| ||| ||| ||||||||||||| ||||   | ||| ||||| ||||||||||| |||||||||| ||||| ||||||    
T  6376 aaagcaattgaatgaagaccaagtcatattt-ctttatcataataataggcttaaatagttataaggtacactatt-aataattagtgtaatggattttg 6473  T
Q  181 actatataatttgaaagaaaaatacaaaatagttttatca 220  Q
     ||||||||||  |||| ||||||||||||| | ||||||    
T  6474 gctatataattccaaag-aaaatacaaaataatattatca 6512  T

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Target: scaffold0042; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 13788 - 13924
Alignment:
Q  81 aaagcaattgaatgaagaccaagccattttttctttatcataatagtaggaagagataattatagggtacactatttaataattagtataatgaattttg 180  Q
    ||||||||||||||||||||||| || | |||||||||||||||| ||||   | ||| ||||| ||||||||| ||||||||||||  |||| ||||||    
T  13788 aaagcaattgaatgaagaccaagtca-tatttctttatcataataataggcttaaatagttataaggtacacta-ttaataattagtgaaatggattttg 13885  T
Q  181 actatataatttgaaagaaaaatacaaaatagttttatca 220  Q
     ||||||||||  |||| ||||||||||||| | ||||||    
T  13886 gctatataattccaaag-aaaatacaaaataatattatca 13924  T

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