View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1383_low_18 (Length: 315)
Name: NF1383_low_18
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1383_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 32150534 - 32150262
Alignment:
| Q |
1 |
catttatgtgtttgttgatgtagacctttgaatcaagattggaccactcatatttcaattatgtattttagaccctattgtttaagtgtacttggtttgc |
100 |
Q |
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| T |
32150534 |
catttatgtgtttgttgatgtagacctttgaatcaagattggaccactcatatttcaattatgtattttagaccttattgtttaagtgtacttggtttgc |
32150435 |
T |
|
| Q |
101 |
tcaattttaatttgacaatccaaattgtacgtatgacaacgtcaaattttcgattcatttttgtataaacta----tgttaataaataccaatttgtgat |
196 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
32150434 |
ccaattttaatttgacagtccaaattgtatgtatgacaacgtcaaattttcgattcatttttgtataaactatgtttgttaataaataacaatttgtgat |
32150335 |
T |
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| Q |
197 |
agaattgttactaataaagagcttctatcttatttcacgttttcaatttttaaagtttgtgggtggaacaact |
269 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
32150334 |
agaattgctactaataaagagcttctatcttatttcacgttttcaacttttgaagtttgtgggtggaacaact |
32150262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 7100082 - 7099996
Alignment:
| Q |
1 |
catttatgtgtttgttgatgtagacctttgaatcaagattggaccactcatatttcaattatgtattttagaccctattgtttaagt |
87 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7100082 |
catttatgtatttgttgatgtagacctttgaatcaagattggaccactcatatttcaattgtgtattttagaccctattgtttaagt |
7099996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 8794548 - 8794634
Alignment:
| Q |
1 |
catttatgtgtttgttgatgtagacctttgaatcaagattggaccactcatatttcaattatgtattttagaccctattgtttaagt |
87 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8794548 |
catttatgtatttgttgatgtagacctttgaatcaagattggaccactcatatttcaattgtgtattttagaccctattgtttaagt |
8794634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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