View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1383_low_23 (Length: 279)
Name: NF1383_low_23
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1383_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 45 - 242
Target Start/End: Complemental strand, 15801082 - 15800885
Alignment:
| Q |
45 |
ttgcagtttgagggtctagttgaacagctttaatgattctttgaattatttggatcatattcttatcaggagctccattatcatcgtacaaatcaaccgc |
144 |
Q |
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| T |
15801082 |
ttgcagtttgagggtctagttgaacagctttaatgattctttgaattatttggatcatattcttatcaggagctccattatcatcgtacaaatcaaccgc |
15800983 |
T |
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| Q |
145 |
tataacaatcaacctccgccgtctcctcaatagaggatattttccaggtgcattctcagcaatgtcattcaaaccaccagagtctgacttcttcatct |
242 |
Q |
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| T |
15800982 |
tataacaatcaacctccgccgtctcctcaatagaggatattttccaggtgcattctcaacaatgtcattcaaaccaccagagtctgacttcttcatct |
15800885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 39813097 - 39812956
Alignment:
| Q |
45 |
ttgcagtttgagggtctagttgaacagctttaatgattctttgaattatttggatcatattcttatcaggagctccattatcatcgtacaaatcaaccgc |
144 |
Q |
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|||||||||||||||||| ||||||||||||||| || ||||||| ||| | |||| |||||||||||| |||||||| || || |||||| || |
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| T |
39813097 |
ttgcagtttgagggtctaattgaacagctttaattatcctttgaactatctcaatcaacttcttatcaggatctccattactgtcataggaatcaagtgc |
39812998 |
T |
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| Q |
145 |
tataacaatcaacctccgccgtctcctcaatagaggatattt |
186 |
Q |
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| T |
39812997 |
tataacaatcaacctgcgccttcgccttaatagagggtattt |
39812956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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