View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1383_low_26 (Length: 254)

Name: NF1383_low_26
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1383_low_26
NF1383_low_26
[»] chr6 (13 HSPs)
chr6 (20-246)||(34894826-34895052)
chr6 (163-210)||(31959221-31959268)
chr6 (165-210)||(8389411-8389456)
chr6 (162-210)||(8776908-8776956)
chr6 (162-210)||(9107299-9107347)
chr6 (162-210)||(10339054-10339102)
chr6 (162-210)||(17327590-17327638)
chr6 (162-210)||(34595205-34595253)
chr6 (156-191)||(10770601-10770636)
chr6 (160-210)||(25207811-25207861)
chr6 (162-198)||(426478-426514)
chr6 (162-210)||(4878014-4878061)
chr6 (162-210)||(8365448-8365496)
[»] scaffold0793 (1 HSPs)
scaffold0793 (162-210)||(4821-4869)
[»] chr8 (10 HSPs)
chr8 (162-210)||(29510233-29510281)
chr8 (164-239)||(44067569-44067644)
chr8 (160-210)||(21465494-21465544)
chr8 (158-210)||(22652058-22652110)
chr8 (162-210)||(30067968-30068016)
chr8 (166-210)||(5813663-5813707)
chr8 (162-210)||(11803341-11803389)
chr8 (160-208)||(15816056-15816104)
chr8 (162-210)||(18407790-18407838)
chr8 (162-210)||(40064033-40064081)
[»] chr7 (14 HSPs)
chr7 (162-210)||(7133212-7133260)
chr7 (163-210)||(32287404-32287451)
chr7 (162-210)||(1401094-1401142)
chr7 (162-210)||(5409771-5409819)
chr7 (162-210)||(17852071-17852119)
chr7 (160-210)||(40131937-40131987)
chr7 (161-210)||(598279-598328)
chr7 (169-210)||(18215144-18215185)
chr7 (161-210)||(43027403-43027452)
chr7 (162-210)||(6490787-6490835)
chr7 (162-210)||(9778576-9778624)
chr7 (164-196)||(28943351-28943383)
chr7 (162-210)||(41229237-41229285)
chr7 (163-199)||(46644622-46644658)
[»] chr4 (18 HSPs)
chr4 (162-210)||(715545-715593)
chr4 (162-210)||(752871-752919)
chr4 (162-208)||(53381530-53381576)
chr4 (162-211)||(11596297-11596346)
chr4 (162-210)||(18513175-18513223)
chr4 (162-210)||(19482750-19482798)
chr4 (162-210)||(23292926-23292974)
chr4 (162-210)||(24343584-24343632)
chr4 (163-210)||(3947702-3947749)
chr4 (162-205)||(40784029-40784072)
chr4 (157-239)||(17876208-17876290)
chr4 (165-210)||(28084595-28084640)
chr4 (162-210)||(944602-944650)
chr4 (162-210)||(2361915-2361963)
chr4 (162-210)||(5414101-5414149)
chr4 (163-211)||(5922532-5922580)
chr4 (160-208)||(7012151-7012199)
chr4 (162-210)||(29205539-29205587)
[»] chr2 (15 HSPs)
chr2 (162-210)||(18840953-18841001)
chr2 (160-210)||(42511320-42511370)
chr2 (162-215)||(37419820-37419873)
chr2 (162-210)||(11223793-11223841)
chr2 (162-210)||(24975255-24975303)
chr2 (162-210)||(26769593-26769641)
chr2 (163-210)||(44860402-44860449)
chr2 (164-210)||(2438661-2438707)
chr2 (160-210)||(35056950-35057000)
chr2 (161-206)||(44635568-44635613)
chr2 (162-210)||(6180790-6180838)
chr2 (162-206)||(12940898-12940942)
chr2 (162-210)||(15909570-15909618)
chr2 (162-210)||(18622673-18622721)
chr2 (162-210)||(38117099-38117147)
[»] scaffold0652 (1 HSPs)
scaffold0652 (163-210)||(403-450)
[»] scaffold0003 (2 HSPs)
scaffold0003 (162-215)||(236914-236967)
scaffold0003 (162-210)||(241676-241724)
[»] chr3 (17 HSPs)
chr3 (162-199)||(16789104-16789141)
chr3 (161-210)||(25074866-25074915)
chr3 (162-210)||(11610580-11610628)
chr3 (162-210)||(18427020-18427068)
chr3 (162-210)||(34185052-34185100)
chr3 (160-198)||(11493334-11493372)
chr3 (164-234)||(24204983-24205053)
chr3 (162-208)||(49651716-49651762)
chr3 (160-210)||(55401146-55401196)
chr3 (161-210)||(27505322-27505371)
chr3 (165-233)||(12100317-12100385)
chr3 (162-210)||(20503536-20503584)
chr3 (162-198)||(21861658-21861694)
chr3 (162-210)||(40052383-40052431)
chr3 (162-210)||(40993275-40993323)
chr3 (162-210)||(41961579-41961627)
chr3 (162-210)||(52369858-52369906)
[»] chr1 (15 HSPs)
chr1 (161-210)||(19562555-19562603)
chr1 (162-210)||(2218299-2218347)
chr1 (162-210)||(6427546-6427594)
chr1 (162-210)||(20157284-20157332)
chr1 (163-210)||(10233327-10233374)
chr1 (162-213)||(16812624-16812675)
chr1 (159-210)||(48040411-48040462)
chr1 (160-210)||(22794016-22794066)
chr1 (164-210)||(42359391-42359437)
chr1 (162-198)||(7918154-7918190)
chr1 (162-210)||(9828126-9828174)
chr1 (162-206)||(31694639-31694683)
chr1 (162-210)||(37598902-37598950)
chr1 (162-210)||(40747707-40747755)
chr1 (162-210)||(40917831-40917879)
[»] chr5 (9 HSPs)
chr5 (162-210)||(19820328-19820376)
chr5 (162-210)||(38464313-38464361)
chr5 (162-210)||(42893431-42893479)
chr5 (161-215)||(2419933-2419987)
chr5 (162-211)||(19552476-19552525)
chr5 (161-210)||(21576684-21576733)
chr5 (165-210)||(39268541-39268586)
chr5 (162-210)||(14873593-14873641)
chr5 (162-210)||(17123119-17123166)
[»] scaffold0450 (1 HSPs)
scaffold0450 (162-210)||(8564-8612)
[»] scaffold0053 (1 HSPs)
scaffold0053 (162-210)||(8869-8917)
[»] scaffold0021 (1 HSPs)
scaffold0021 (162-210)||(2978-3026)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 34894826 - 34895052
Alignment:
Q  20 tgtaagacactatgtattttgaaaattgttgacttcattttaaaagaataagataagccagaaaaacgttgcacatgcagtaagatttacatgtaactaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34894826 tgtaagacactatgtattttgaaaattgttgacttcattttaaaagaataagataagccagaaaaacgttgcacatgcagtaagatttacatgtaactaa 34894925  T
Q  120 tatttcttgccgaccctcaaagttcaaaatagcatatgacagctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaagcattagt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34894926 tatttcttgccgaccctcaaagttcaaaatagcatatgacagctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaagcattagt 34895025  T
Q  220 ttgcgacacgacactgacacctatgat 246  Q
    || ||||| ||||||||||||||||||    
T  34895026 ttccgacatgacactgacacctatgat 34895052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 31959268 - 31959221
Alignment:
Q  163 tatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||||  |||||||||||||| ||||||||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggaca 31959221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 8389411 - 8389456
Alignment:
Q  165 tgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||    
T  8389411 tgaagcacggacactcctcggattaggtgtgtcccggtgtcggaca 8389456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 8776908 - 8776956
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||||||||| | ||||||||||    
T  8776908 ctatgaagcacggacactcctcggattaggtgtgtctcggtgtcggaca 8776956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 9107299 - 9107347
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||| ||||||||  |||||||||||||| ||||||||||    
T  9107299 ctatgaagcacgggcactcctcggattaggtgtgtcccggtgtcggaca 9107347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 10339054 - 10339102
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| ||||||| ||||||||||    
T  10339054 ctatgaagcacggacactcctccgattaggcgtgtcccagtgtcggaca 10339102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 17327590 - 17327638
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| ||||||||||||| ||||    
T  17327590 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagaca 17327638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 34595253 - 34595205
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||||||||||| ||||| ||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagaca 34595205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 10770601 - 10770636
Alignment:
Q  156 tgacagctatgaagcacggacactcctcatattagg 191  Q
    ||||||||||||||||||||||||||||| ||||||    
T  10770601 tgacagctatgaagcacggacactcctcagattagg 10770636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 25207861 - 25207811
Alignment:
Q  160 agctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||| ||||| | ||||||||||||||||| ||||||| ||||||||||    
T  25207861 agctataaagcatgaacactcctcatattaggcgtgtcccggtgtcggaca 25207811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 426478 - 426514
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtcc 198  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  426478 ctatgaagcacggacactcctcagattaggcgtgtcc 426514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 4878061 - 4878014
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| |||| |||||||||||||    
T  4878061 ctatgaagcacggacactcctcggattaggcgtgt-cctgtgtcggaca 4878014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 8365448 - 8365496
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||| |||||||  |||||| ||||||| ||||||||||    
T  8365448 ctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggaca 8365496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 4821 - 4869
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  4821 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 4869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 29510233 - 29510281
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggaca 29510281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 44067644 - 44067569
Alignment:
Q  164 atgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaagcattagtttgcgacacgacactgacac 239  Q
    ||||||||||||||||||||  |||||| ||||||  |||||||||| |||| ||| | ||||||||||| |||||    
T  44067644 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacacgacaccgacac 44067569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 21465544 - 21465494
Alignment:
Q  160 agctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||||| |||||| || ||||||||| |||||    
T  21465544 agctatgaagcacggacactcctcaaattaggcgtatccctgtgttggaca 21465494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 22652110 - 22652058
Alignment:
Q  158 acagctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||||||  |||||  ||||||| ||||||||||    
T  22652110 acagctatgaagcacggacactcctcggattagacgtgtcccggtgtcggaca 22652058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 30067968 - 30068016
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||| ||  |||||||||||||| ||||||||||    
T  30067968 ctatgaagcacggacactcatcggattaggtgtgtcccagtgtcggaca 30068016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 5813707 - 5813663
Alignment:
Q  166 gaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||  |||||| ||||||| ||||||||||    
T  5813707 gaagcacggacactcctccaattaggcgtgtcccggtgtcggaca 5813663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 11803389 - 11803341
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||  |||| |||||||||||||    
T  11803389 ctatgaagcacggacactcctcggattagacgtgtacctgtgtcggaca 11803341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 15816056 - 15816104
Alignment:
Q  160 agctatgaagcacggacactcctcatattaggtgtgtccctgtgtcgga 208  Q
    |||||||||||||||||||| |||  |||||| ||||||| ||||||||    
T  15816056 agctatgaagcacggacacttctcggattaggcgtgtcccggtgtcgga 15816104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 18407838 - 18407790
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| ||||||  ||||||||||    
T  18407838 ctatgaagcacggacactcctccaattaggcgtgtcctagtgtcggaca 18407790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 40064081 - 40064033
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||| ||||||||||||||||  ||||| |||||||| ||||||||||    
T  40064081 ctatgtagcacggacactcctcggattagatgtgtcccggtgtcggaca 40064033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 7133212 - 7133260
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  7133212 ctatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggaca 7133260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 32287404 - 32287451
Alignment:
Q  163 tatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||||  |||||||||||||| ||||||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggaca 32287451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 1401142 - 1401094
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||| |||||||||||| ||||||||||||||  |||||||||    
T  1401142 ctatgaagcatggacactcctcagattaggtgtgtcccgatgtcggaca 1401094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 5409771 - 5409819
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| ||||||| ||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggaca 5409819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 17852119 - 17852071
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||||||||| | ||||||||||    
T  17852119 ctatgaagcacggacactcctcgaattaggtgtgtctcggtgtcggaca 17852071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 40131937 - 40131987
Alignment:
Q  160 agctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||| ||||||||||  |||||  ||||||||||||||||||    
T  40131937 agctatgaagcacagacactcctcggattagacgtgtccctgtgtcggaca 40131987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 598328 - 598279
Alignment:
Q  161 gctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||| |||  |||||| ||||||| ||||||||||    
T  598328 gctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggaca 598279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 18215144 - 18215185
Alignment:
Q  169 gcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||| |||||| ||||||| ||||||||||    
T  18215144 gcacggacactcctcagattaggcgtgtcccggtgtcggaca 18215185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 43027403 - 43027452
Alignment:
Q  161 gctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||| ||  |||||| ||||||| ||||||||||    
T  43027403 gctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggaca 43027452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 6490835 - 6490787
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||| | ||||||| ||||||||||    
T  6490835 ctatgaagcacggacactcctcggattaagcgtgtcccggtgtcggaca 6490787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 9778624 - 9778576
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||||   |||||| ||||||| ||||||||||    
T  9778624 ctatgaagcacggacactccttggattaggcgtgtcccggtgtcggaca 9778576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 28943351 - 28943383
Alignment:
Q  164 atgaagcacggacactcctcatattaggtgtgt 196  Q
    ||||||||||||||||||||| |||||||||||    
T  28943351 atgaagcacggacactcctcagattaggtgtgt 28943383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 41229237 - 41229285
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||| ||||||||||| ||||| | ||| ||||||    
T  41229237 ctatgaagcacggacacttctcatattaggcgtgtcgcagtgacggaca 41229285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 46644622 - 46644658
Alignment:
Q  163 tatgaagcacggacactcctcatattaggtgtgtccc 199  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  46644622 tatgaagcacggacactccacatatcaggtgtgtccc 46644658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 715545 - 715593
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  715545 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 715593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 752871 - 752919
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  752871 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 752919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 53381530 - 53381576
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcgga 208  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcgga 53381576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 11596297 - 11596346
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaa 211  Q
    ||||||||||||||||||||||| |||||| |||||||  ||||||||||    
T  11596297 ctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacaa 11596346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 18513175 - 18513223
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||| |||||| ||||||  ||||||||||    
T  18513175 ctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggaca 18513223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 19482798 - 19482750
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||| |||||||||  |||||||||||||| ||||||||||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggaca 19482750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 23292926 - 23292974
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| ||||||| ||||||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggaca 23292974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 24343632 - 24343584
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||| | |||| ||||||| ||||||||||    
T  24343632 ctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggaca 24343584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 3947702 - 3947749
Alignment:
Q  163 tatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||||  |||||||||||||  ||||||||||    
T  3947702 tatgaagcacggacactcctcggattaggtgtgtcctggtgtcggaca 3947749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 40784072 - 40784029
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtc 205  Q
    ||||||||||||||||||||||  |||||||||||||| |||||    
T  40784072 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtc 40784029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 17876290 - 17876208
Alignment:
Q  157 gacagctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaagcattagtttgcgacacgacactgacac 239  Q
    |||| ||||||||||| |||||||||   |||||||||||||  ||||||||||||| |  || |  ||||||||||||||||    
T  17876290 gacacctatgaagcacagacactccttggattaggtgtgtcctggtgtcggacaagcgtcggtgtctgacacgacactgacac 17876208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 28084640 - 28084595
Alignment:
Q  165 tgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||  |||||| ||||||| ||||||||||    
T  28084640 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggaca 28084595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 944602 - 944650
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||| | || |||||||| |||||||||||||| ||||||||||    
T  944602 ctatgaagctcagagactcctcagattaggtgtgtcccggtgtcggaca 944650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 2361915 - 2361963
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||| ||| |||||||||||| | ||||| ||||    
T  2361915 ctatgaagcacggacactcgtcagattaggtgtgtctcggtgtcagaca 2361963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 5414101 - 5414149
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||||   || ||||||||||||||||| ||||    
T  5414101 ctatgaagcacggacactccttggataaggtgtgtccctgtgtcagaca 5414149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 5922532 - 5922580
Alignment:
Q  163 tatgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaa 211  Q
    |||||||||  ||||||||||| |||||| ||||||| |||||||||||    
T  5922532 tatgaagcagagacactcctcagattaggcgtgtcccagtgtcggacaa 5922580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 7012199 - 7012151
Alignment:
Q  160 agctatgaagcacggacactcctcatattaggtgtgtccctgtgtcgga 208  Q
    ||||||||||||||||||||||||  |||||||||  ||| ||||||||    
T  7012199 agctatgaagcacggacactcctcgcattaggtgttccccggtgtcgga 7012151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 29205587 - 29205539
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||| |||||||||  |||||| ||||||| ||||||||||    
T  29205587 ctatgaagcacgaacactcctcggattaggcgtgtcccagtgtcggaca 29205539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 18840953 - 18841001
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||||||||||| ||||||||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggaca 18841001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 42511320 - 42511370
Alignment:
Q  160 agctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||||  |||||  ||||||||||||||||||    
T  42511320 agctatgaagcacggacactcctcggattagccgtgtccctgtgtcggaca 42511370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 37419873 - 37419820
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaagcat 215  Q
    ||||||||||||||||||||||  |||||| ||||||| |||||||||| ||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcat 37419820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 11223793 - 11223841
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||| ||||    
T  11223793 ctatgaagcacggacactcctcagattaggcgtgtcccggtgtcagaca 11223841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 24975255 - 24975303
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||| ||||| | |||||| ||||||||||    
T  24975255 ctatgaagcacggacactcctcagattagatttgtcccagtgtcggaca 24975303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 26769641 - 26769593
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| ||||||| ||||||||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggaca 26769593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 44860449 - 44860402
Alignment:
Q  163 tatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||||  ||||||||||||||  |||||||||    
T  44860449 tatgaagcacggacactcctcgaattaggtgtgtcccgatgtcggaca 44860402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 2438661 - 2438707
Alignment:
Q  164 atgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||  |||||| ||||||| ||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggaca 2438707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 35057000 - 35056950
Alignment:
Q  160 agctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||||| |||||| ||||  | ||||||||||    
T  35057000 agctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggaca 35056950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 44635613 - 44635568
Alignment:
Q  161 gctatgaagcacggacactcctcatattaggtgtgtccctgtgtcg 206  Q
    |||||||||||||||||||||||| |||||| ||||| | ||||||    
T  44635613 gctatgaagcacggacactcctcagattaggcgtgtctcggtgtcg 44635568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 6180790 - 6180838
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||| |||||||| |||||||||||| | || |||||||    
T  6180790 ctatgaagcacggaaactcctcagattaggtgtgtctcagtatcggaca 6180838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 12940898 - 12940942
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcg 206  Q
    ||||||||||| ||||||||||||||||  | |||||||||||||    
T  12940898 ctatgaagcacagacactcctcatattatatatgtccctgtgtcg 12940942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 15909570 - 15909618
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||| |||||| ||  |||||| ||||||||||||||||||    
T  15909570 ctatgaagcacgaacactcttcgaattaggcgtgtccctgtgtcggaca 15909618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 18622721 - 18622673
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||| ||||||||| |||| |||||    
T  18622721 ctatgaagcacggacactcctcggattaagtgtgtcccggtgtaggaca 18622673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 38117099 - 38117147
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||| ||||  |||||| ||||||| ||||||||||    
T  38117099 ctatgaagcacggacacccctcggattaggcgtgtcccggtgtcggaca 38117147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 403 - 450
Alignment:
Q  163 tatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||||  |||||||||||||| ||||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggaca 450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 236914 - 236967
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaagcat 215  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||| |||| ||||    
T  236914 ctatgaagcacagacactcctcagattaggtgtgtcccggtgtcagacacgcat 236967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 241724 - 241676
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||| |||  |||||| ||||||| ||||||||||    
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggaca 241676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 16789141 - 16789104
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccc 199  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  16789141 ctatgaagcacggacactcctcaaattaggtgtgtccc 16789104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 25074915 - 25074866
Alignment:
Q  161 gctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||| |||||||||  |||||||||||||| ||||||||||    
T  25074915 gctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggaca 25074866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 11610628 - 11610580
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||| |||||| |||||||  |||||||||    
T  11610628 ctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggaca 11610580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 18427068 - 18427020
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||| ||||||||||||||| |||||||||||||| ||| ||||||    
T  18427068 ctatgaaacacggacactcctcagattaggtgtgtcccggtgccggaca 18427020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 34185052 - 34185100
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| ||||||| ||||||||||    
T  34185052 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggaca 34185100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 11493334 - 11493372
Alignment:
Q  160 agctatgaagcacggacactcctcatattaggtgtgtcc 198  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  11493334 agctatgaagcacggacattcctcatattaggcgtgtcc 11493372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 24204983 - 24205053
Alignment:
Q  164 atgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaagcattagtttgcgacacgacact 234  Q
    ||||||||||||||||||||  |||||| ||||||  |||||||||| || | ||| | ||||||||||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacacgacact 24205053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 49651716 - 49651762
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcgga 208  Q
    |||||||||||||||||| |||  |||||||||||||| ||||||||    
T  49651716 ctatgaagcacggacacttctcggattaggtgtgtcccggtgtcgga 49651762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 55401196 - 55401146
Alignment:
Q  160 agctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||||  |||||| ||||| | ||||||||||    
T  55401196 agctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggaca 55401146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 27505371 - 27505322
Alignment:
Q  161 gctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||||||  ||||||  |||||| ||||||||||    
T  27505371 gctatgaagcacggacactcctcggattaggcatgtcccggtgtcggaca 27505322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 12100385 - 12100317
Alignment:
Q  165 tgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaagcattagtttgcgacacgacac 233  Q
    |||||||||| ||||||||  | |||||||||||| |||||||||| || ||||| |  ||||||||||    
T  12100385 tgaagcacgggcactcctcggactaggtgtgtcccggtgtcggacacgcgttagtgtcagacacgacac 12100317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 20503584 - 20503536
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| ||||||| ||||| ||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagaca 20503536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 21861694 - 21861658
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtcc 198  Q
    ||||||||||||||||||||||  |||||||||||||    
T  21861694 ctatgaagcacggacactcctcggattaggtgtgtcc 21861658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 40052431 - 40052383
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||| |||||||||  |||||| ||||||| ||||||||||    
T  40052431 ctatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggaca 40052383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 40993275 - 40993323
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||| |||||||||||  |||||| ||||||| ||||||||||    
T  40993275 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggaca 40993323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 41961579 - 41961627
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||| |||  |||||| ||||||| ||||||||||    
T  41961579 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggaca 41961627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 52369906 - 52369858
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  | |||||||||||| |||| |||||    
T  52369906 ctatgaagcacggacactcctcggaataggtgtgtcccggtgttggaca 52369858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 19562555 - 19562603
Alignment:
Q  161 gctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||||||    
T  19562555 gctatgaagcacg-acactcctcggattaggtgtgtccctgtgtcggaca 19562603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 2218347 - 2218299
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||| |||||| ||||||  ||||||||||    
T  2218347 ctatgaagcacggacactcctcagattaggcgtgtcctagtgtcggaca 2218299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 6427594 - 6427546
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||| ||| |||||| ||||||| ||||||||||    
T  6427594 ctatgaagcacggacactcatcagattaggcgtgtcccggtgtcggaca 6427546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 20157284 - 20157332
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||| |||||||| |||||||||||| | ||||||||||    
T  20157284 ctatgaagcacggatactcctcaaattaggtgtgtctcggtgtcggaca 20157332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 10233374 - 10233327
Alignment:
Q  163 tatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||||  |||||||||||||  ||||||||||    
T  10233374 tatgaagcacggacactcctctgattaggtgtgtcctggtgtcggaca 10233327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 16812675 - 16812624
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaagc 213  Q
    ||||||||||||||||||||||| |||||| ||||||| || ||||| ||||    
T  16812675 ctatgaagcacggacactcctcagattaggcgtgtcccggtttcggataagc 16812624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 48040411 - 48040462
Alignment:
Q  159 cagctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||| ||||||||||||||||||  |||||| ||||||| ||||||||||    
T  48040411 cagctacgaagcacggacactcctccaattaggcgtgtcccagtgtcggaca 48040462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 22794016 - 22794066
Alignment:
Q  160 agctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||| |||||||||  |||||||||||||| | ||||||||    
T  22794016 agctatgaagcacgtacactcctcgaattaggtgtgtcccggagtcggaca 22794066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 42359391 - 42359437
Alignment:
Q  164 atgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||  |||||| ||||||| ||||||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggaca 42359437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 7918154 - 7918190
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtcc 198  Q
    ||||||||||||||||||||||  |||||||||||||    
T  7918154 ctatgaagcacggacactcctcggattaggtgtgtcc 7918190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 9828174 - 9828126
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||  ||||||| ||||||||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggaca 9828126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 31694639 - 31694683
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcg 206  Q
    ||||||||||||||||||||||| |||||| |||| || ||||||    
T  31694639 ctatgaagcacggacactcctcagattaggcgtgttccggtgtcg 31694683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 37598950 - 37598902
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| |||||||  |||||||||    
T  37598950 ctatgaagcacggacactcctcggattaggcgtgtcccattgtcggaca 37598902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 40747707 - 40747755
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||| ||||||  |||||| |||||||||||| |||||    
T  40747707 ctatgaagcacggacgctcctcggattaggggtgtccctgtgtgggaca 40747755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 40917879 - 40917831
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||| |||||  |||||| ||||||| ||||||||||    
T  40917879 ctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggaca 40917831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 19820328 - 19820376
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| ||||||| ||||||||||    
T  19820328 ctatgaagcacggacactcctctgattaggcgtgtcccggtgtcggaca 19820376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 38464313 - 38464361
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||| ||||||||||  |||||||||||||| ||||||||||    
T  38464313 ctatgaagcacagacactcctcggattaggtgtgtcccggtgtcggaca 38464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 42893479 - 42893431
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||| ||||||||||||||||||| ||||||  ||||||||||    
T  42893479 ctatgaagcatggacactcctcatattaggcgtgtcctggtgtcggaca 42893431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 2419987 - 2419933
Alignment:
Q  161 gctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaagcat 215  Q
    |||||||||||||||||||| ||  |||||||||||||| | |||||||| ||||    
T  2419987 gctatgaagcacggacactcatcggattaggtgtgtcccggggtcggacacgcat 2419933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 19552476 - 19552525
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggacaa 211  Q
    ||||||| ||||||||||||||  |||||||||||||  |||||||||||    
T  19552476 ctatgaaacacggacactcctcggattaggtgtgtccaagtgtcggacaa 19552525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 21576684 - 21576733
Alignment:
Q  161 gctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||||||  |||||| ||||||| ||||| ||||    
T  21576684 gctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagaca 21576733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 39268541 - 39268586
Alignment:
Q  165 tgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||  |||||| ||||||| ||||||||||    
T  39268541 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggaca 39268586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 14873641 - 14873593
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| ||||||| |||| |||||    
T  14873641 ctatgaagcacggacactcctcggattaggcgtgtcccggtgttggaca 14873593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 17123166 - 17123119
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| ||||||| ||||||||||    
T  17123166 ctatgaagcacggacactcctcggattaggcgtgtccc-gtgtcggaca 17123119  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 8564 - 8612
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    ||||||||||||||||||||||  |||||| |||| || ||||||||||    
T  8564 ctatgaagcacggacactcctcgaattaggcgtgtaccagtgtcggaca 8612  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 8917 - 8869
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||| |||||||| |||||| ||||| | ||||||||||    
T  8917 ctatgaagcacggagactcctcagattaggcgtgtctcggtgtcggaca 8869  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 2978 - 3026
Alignment:
Q  162 ctatgaagcacggacactcctcatattaggtgtgtccctgtgtcggaca 210  Q
    |||||||||||||||||||| ||||||||| ||||  | ||||||||||    
T  2978 ctatgaagcacggacactccccatattaggcgtgtttcagtgtcggaca 3026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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