View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1383_low_31 (Length: 251)
Name: NF1383_low_31
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1383_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 43296168 - 43296403
Alignment:
| Q |
1 |
aatctctctctatttatttgtaagatgtacaatttgacactttcagaaatttgtaaatatagatagatgtactcattttttatgtcttgtgtcaatcgtg |
100 |
Q |
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| T |
43296168 |
aatctctctctatttatttgtaagatgtacaatttgacactttcagaaatttgtaaatatagatagatgtactcattttttatgtcttgtgtcaattgtg |
43296267 |
T |
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| Q |
101 |
taacttgctgttagaactcggaagcattaaatttgctgaagcaactcgccaattttaaaggcattattataatttataactaaaacacaaaacactttgt |
200 |
Q |
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| T |
43296268 |
taacttgctgttagaacttggaagcattaaatttgctgaagcaactcgccaattttaaaggcattattataatttataactaaaacacaaaacactttgt |
43296367 |
T |
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| Q |
201 |
tctacttctgatataacgtgtttttgttcattctac |
236 |
Q |
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| T |
43296368 |
tctacttctgatataacgtgtttttgttcattctac |
43296403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 43267652 - 43267710
Alignment:
| Q |
4 |
ctctctctatttatttgtaagatgtacaatttgacactttcagaaatttgtaaatatag |
62 |
Q |
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| T |
43267652 |
ctctctctttttgtttgtaagatgtacaacttgacactttcagaagtttgtaaatatag |
43267710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 43269138 - 43269178
Alignment:
| Q |
143 |
aactcgccaattttaaaggcattattataatttataactaa |
183 |
Q |
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| T |
43269138 |
aactctcccattttaaaggcattattataatttataactaa |
43269178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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