View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1383_low_32 (Length: 236)
Name: NF1383_low_32
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1383_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 7211104 - 7210965
Alignment:
| Q |
1 |
ggataataacaaatataatgtaaaagattctcaccctgtctgattgaaaaattgactcagctcatcccaccttttcatgtgtaaacatccctttgaaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7211104 |
ggataataacaaatataatgtaaaagattctcaccctgtctgattgaaaaattgattcagctcatcccatcttttcatgtgtaaacatccctttgaaaat |
7211005 |
T |
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| Q |
101 |
ccaaataaccaaccttgaccattcatcttttgaaatggat |
140 |
Q |
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| T |
7211004 |
ccaaataaccaaccttgaccattcatcttttgaagtggat |
7210965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 7197300 - 7197197
Alignment:
| Q |
1 |
ggataataacaaatataatgtaaaagattctcaccctgtctgattgaaaaattgactcagctcatcccaccttttcatgtgtaaacatccctttgaaaat |
100 |
Q |
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|||||||||||||||||||| | ||||| |||||||||||| ||||||||| ||| |||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
7197300 |
ggataataacaaatataatg-agaagatcctcaccctgtcttattgaaaaaatgattcagctcatcccacctttgcatgtgtaaagatccctttgaaaat |
7197202 |
T |
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| Q |
101 |
ccaaa |
105 |
Q |
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||||| |
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| T |
7197201 |
ccaaa |
7197197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 7204496 - 7204397
Alignment:
| Q |
2 |
gataataacaaatataatgtaaaagattctcaccctgtctgattgaaaaattgactcagctcatcccaccttttcatgtgtaaacatccctttgaaaatc |
101 |
Q |
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||||||||||||||||||||| | |||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||||| |||||| |||||||| |
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| T |
7204496 |
gataataacaaatataatgtata-gattctcaccctgtcttgttgaaaaaatgattcagctcatcccacctttgcatgtgtaaagatccctctgaaaatc |
7204398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 45388353 - 45388278
Alignment:
| Q |
30 |
ctcaccctgtctgattgaaaaattgactcagctcatcccaccttttcatgtgtaaacatccctttgaaaatccaaa |
105 |
Q |
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|||||||||| | |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45388353 |
ctcaccctgtatttttgaaaaaatgattcagctcatcccaccttttcatgtgtaaacatccctttgaaaatccaaa |
45388278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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