View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1383_low_33 (Length: 233)
Name: NF1383_low_33
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1383_low_33 |
 | |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 3846222 - 3846429
Alignment:
| Q |
12 |
cacagacatcaaccacgacatttactataacacataaacacaagtaataatttgagaaaatttaagtaattgaatgtaattaaatgcatcagtgccttgt |
111 |
Q |
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|||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3846222 |
cacaaacatcaaacacgacatttactatgacacataaacacaagtaataatttgagaaaatttaagtaattgaatgtaattaaatgcatcagtgccttgt |
3846321 |
T |
|
| Q |
112 |
caggggtatgcaccaacatgtgtcggacaccagttttcaatctaaagtgtcaatacaacatccaggctatgaagcattgacacatacacgagcatcgaac |
211 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
3846322 |
caggggtatgcaccaacatgtgtcagacaccagttttcaatctaaagtgtcaatacaacatccaggctatgaagcattgacacatacatgaacatcgaac |
3846421 |
T |
|
| Q |
212 |
aaactact |
219 |
Q |
| |
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|||||||| |
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| T |
3846422 |
aaactact |
3846429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 15802352 - 15802387
Alignment:
| Q |
55 |
gtaataatttgagaaaatttaagtaattgaatgtaa |
90 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
15802352 |
gtaataatttgagaaaatttaagtaattgaatgtaa |
15802387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 26073227 - 26073271
Alignment:
| Q |
49 |
acacaagtaataatttgagaaaatttaagtaattgaatgtaatta |
93 |
Q |
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| T |
26073227 |
acacaagtaataatttaagaaagtagaagtaattgaatgtaatta |
26073271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 20742367 - 20742412
Alignment:
| Q |
46 |
taaacacaagtaataatttgagaaaatttaagtaattgaatgtaat |
91 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
20742367 |
taaacaccagtaataatttgagaaaatgcaagtaattgaatgtaat |
20742412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 43061731 - 43061690
Alignment:
| Q |
49 |
acacaagtaataatttgagaaaatttaagtaattgaatgtaa |
90 |
Q |
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|||| ||||||||||||||||||| ||| ||||||||||||| |
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| T |
43061731 |
acactagtaataatttgagaaaatataaataattgaatgtaa |
43061690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 11556996 - 11556961
Alignment:
| Q |
55 |
gtaataatttgagaaaatttaagtaattgaatgtaa |
90 |
Q |
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|
|||||||||||||||||||||||| ||||||||||| |
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| T |
11556996 |
gtaataatttgagaaaatttaagtgattgaatgtaa |
11556961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 23559640 - 23559706
Alignment:
| Q |
25 |
cacgacatttactataacacataaacacaagtaataatttgagaaaatttaagtaattgaatgtaat |
91 |
Q |
| |
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||||||| | ||||||||||||| ||| ||||||||||| | |||||| |||| |||||||||||| |
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| T |
23559640 |
cacgacagtgactataacacatagacatcagtaataatttcaaaaaattgaagtgattgaatgtaat |
23559706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 18542269 - 18542227
Alignment:
| Q |
49 |
acacaagtaataatttgagaaaatttaagtaattgaatgtaat |
91 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
18542269 |
acaccagtaataatttgagaaaatacaagtaattgaatgtaat |
18542227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 398638 - 398679
Alignment:
| Q |
49 |
acacaagtaataatttgagaaaatttaagtaattgaatgtaa |
90 |
Q |
| |
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|||||| ||||||||| |||||||| |||||||||||||||| |
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| T |
398638 |
acacaaataataatttaagaaaattgaagtaattgaatgtaa |
398679 |
T |
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