View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1383_low_36 (Length: 210)

Name: NF1383_low_36
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1383_low_36
NF1383_low_36
[»] chr6 (1 HSPs)
chr6 (2-125)||(3846222-3846345)
[»] chr3 (2 HSPs)
chr3 (47-82)||(15802352-15802387)
chr3 (44-88)||(26073227-26073271)
[»] chr4 (2 HSPs)
chr4 (46-91)||(20742367-20742412)
chr4 (47-88)||(43061690-43061731)
[»] chr8 (2 HSPs)
chr8 (47-82)||(11556961-11556996)
chr8 (46-112)||(23559640-23559706)
[»] chr5 (1 HSPs)
chr5 (46-88)||(18542227-18542269)
[»] scaffold0001 (1 HSPs)
scaffold0001 (47-88)||(398638-398679)


Alignment Details
Target: chr6 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 3846345 - 3846222
Alignment:
Q  2 gacacatgttggtgcatacccctgacaaggcactgatgcatttaattacattcaattacttaaattttctcaaattattacttgtgtttatgtgttatag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3846345 gacacatgttggtgcatacccctgacaaggcactgatgcatttaattacattcaattacttaaattttctcaaattattacttgtgtttatgtgtcatag 3846246  T
Q  102 taaatgtcgtggttgatgtctgtg 125  Q
    ||||||||||| ||||||| ||||    
T  3846245 taaatgtcgtgtttgatgtttgtg 3846222  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 15802387 - 15802352
Alignment:
Q  47 ttacattcaattacttaaattttctcaaattattac 82  Q
    ||||||||||||||||||||||||||||||||||||    
T  15802387 ttacattcaattacttaaattttctcaaattattac 15802352  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 26073271 - 26073227
Alignment:
Q  44 taattacattcaattacttaaattttctcaaattattacttgtgt 88  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||    
T  26073271 taattacattcaattacttctactttcttaaattattacttgtgt 26073227  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 20742412 - 20742367
Alignment:
Q  46 attacattcaattacttaaattttctcaaattattacttgtgttta 91  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||    
T  20742412 attacattcaattacttgcattttctcaaattattactggtgttta 20742367  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 43061690 - 43061731
Alignment:
Q  47 ttacattcaattacttaaattttctcaaattattacttgtgt 88  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||    
T  43061690 ttacattcaattatttatattttctcaaattattactagtgt 43061731  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 11556961 - 11556996
Alignment:
Q  47 ttacattcaattacttaaattttctcaaattattac 82  Q
    ||||||||||| ||||||||||||||||||||||||    
T  11556961 ttacattcaatcacttaaattttctcaaattattac 11556996  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 23559706 - 23559640
Alignment:
Q  46 attacattcaattacttaaattttctcaaattattacttgtgtttatgtgttatagtaaatgtcgtg 112  Q
    |||||||||||| |||| |||||| | |||||||||||  ||| ||||||||||||| | |||||||    
T  23559706 attacattcaatcacttcaattttttgaaattattactgatgtctatgtgttatagtcactgtcgtg 23559640  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 18542227 - 18542269
Alignment:
Q  46 attacattcaattacttaaattttctcaaattattacttgtgt 88  Q
    |||||||||||||||||  ||||||||||||||||||| ||||    
T  18542227 attacattcaattacttgtattttctcaaattattactggtgt 18542269  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 398679 - 398638
Alignment:
Q  47 ttacattcaattacttaaattttctcaaattattacttgtgt 88  Q
    |||||||||||||||| |||||||| ||||||||| ||||||    
T  398679 ttacattcaattacttcaattttcttaaattattatttgtgt 398638  T

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