View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1383_low_6 (Length: 600)
Name: NF1383_low_6
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1383_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 7211080 - 7211603
Alignment:
| Q |
1 |
ttttacattatatttgttattatcctcaccgccaccctcactttcttttcttttaaactaaataaaaggatagtttcaataattcaatttagtcctttct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7211080 |
ttttacattatatttgttattatcctcaccgccaccctcactttcttttcttttaaactaaataaaaggatagtttcaataattcaatttagtcctttct |
7211179 |
T |
|
| Q |
101 |
tccttataattaaagactttaggtgattcaatgtattgtcttctatcctgcactattgtaacagtttttcttagcttacaacgagtgtctgagatatcag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
7211180 |
tccttataattaaagactttaggtgattcaatgtattgtcttctatcctgcactattgcaacagtttttgttagcttacaacgagtgtctgagatatcag |
7211279 |
T |
|
| Q |
201 |
gatgtgatccaatccgttgtgtaaatatgtaccaaaacaaagaacttggatgtatgtgtctggtagaattatgattacgtctggtaggagtaacttaatt |
300 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
7211280 |
gatgtgatccaatccattgtgtaaatatgtaccaaaacaaagaacttggatgtctgtgtctggtagaatt-------------------gtaacttaatt |
7211360 |
T |
|
| Q |
301 |
gaagtttgacacatgcagggccattgtgatgtttggcttgaatgcgctcagtgggaggcacaagattagtaacactagtaatgtttgggaaggagcctgg |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7211361 |
gaagtttgacacatgcagggccattgtgatgtttggtttgaatgcgctcagtgggaggcacaagattagtaacactagtaatgtttgggaaggagcctgg |
7211460 |
T |
|
| Q |
401 |
gactctaaaaatgcttatgattttataaagtacactgtttcaaagggatacaagattgatgcatgggaatttggtatgacaatagacaaagtattttgtt |
500 |
Q |
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| T |
7211461 |
gaccctacaaatgcttatgattttataaagtacactgtttcaaagggatacaagattgatgcatgggaatttggtatgacaatagacaaagtattttgtt |
7211560 |
T |
|
| Q |
501 |
attgtcgttaatgcattagtttgttttagcatatgcccaattg |
543 |
Q |
| |
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||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
7211561 |
attgttgttaatgcattagtttgttttagcatctgcccaattg |
7211603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 125 - 543
Target Start/End: Original strand, 7204616 - 7205038
Alignment:
| Q |
125 |
gattcaatgtattgtcttctatcctgcactattgtaacagtttttcttagcttacaacgagtgtctgagatatcaggatgtgatccaatccgtt--gtgt |
222 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| | || || |||| |
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| T |
7204616 |
gattcaatatattgtcttctatcctgtactattgcaacagtttttgttagcttacaaagagtgtctgagatatcaggatgtgatcgaccccattttgtgt |
7204715 |
T |
|
| Q |
223 |
aaatatgtaccaaaacaaagaacttggatgtatgtgtctggtagaattatgattacgtctggtagga--gtaacttaattgaagtttgacacatgcaggg |
320 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
7204716 |
aaatatgtaccaaaacaaagaacttggatatatgtgtctggtagaattatgattacgtctggtagaattgtaacttaattgaagtttgacacatgcaggg |
7204815 |
T |
|
| Q |
321 |
ccattgtgatgtttggcttgaatgcgctcagtgggaggcacaagattagtaacactagtaatgtttgggaaggagcctgggactctaaaaatgcttatga |
420 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
7204816 |
ccattgtgatgtttgggttgaatgcgctcagtgggaggcacaagattagtaacactagtaatgtttgggaaggagcctgggaccctacaaatgcttatga |
7204915 |
T |
|
| Q |
421 |
ttttataaagtacactgtttcaaagggatacaagattgatgcatgggaatttggtatgacaatagacaaagtattttgttattgtcgttaatgcattagt |
520 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | ||||| |||||||| |
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| T |
7204916 |
ttttataaagtacactgtttcaaagggatacaagattgatgcatgggaatttggtacgacaatagacaaagtagtttgttatttttgttaacgcattagt |
7205015 |
T |
|
| Q |
521 |
ttgttttagcatatgcccaattg |
543 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
7205016 |
ttgttttagcatatgcccaattg |
7205038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 316 - 513
Target Start/End: Original strand, 7197930 - 7198127
Alignment:
| Q |
316 |
cagggccattgtgatgtttggcttgaatgcgctcagtgggaggcacaagattagtaacactagtaatgtttgggaaggagcctgggactctaaaaatgct |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||| || |||| ||||||||||||||||||||||||| ||| ||||||| |
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| T |
7197930 |
cagggccattgtgatgtttggcttgaatgccctcattgggaggcacaagattaacaatactaataatgtttgggaaggagcctgggaccctacaaatgct |
7198029 |
T |
|
| Q |
416 |
tatgattttataaagtacactgtttcaaagggatacaagattgatgcatgggaatttggtatgacaatagacaaagtattttgttattgtcgttaatg |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| |
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| T |
7198030 |
tatgattttataaagtacactgtttcaaagggatacaagattgatgcatgggaatttggtacgacaatagacaaagtagtttgttattttcgttaatg |
7198127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 123 - 320
Target Start/End: Original strand, 7197417 - 7197614
Alignment:
| Q |
123 |
gtgattcaatgtattgtcttctatcctgcactattgtaacagtttttcttagcttacaacgagtgtctgagatatcaggatgtgatccaatccgtt--gt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | || || || |
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| T |
7197417 |
gtgattcaatgtattgtcttctatcctgcactattgtaacagtttttgttagcttacaaagagtgtctgagatatcaggatgtgatcgaccccattttgt |
7197516 |
T |
|
| Q |
221 |
gtaaatatgtaccaaaacaaagaacttggatgtatgtgtctggtagaattatgattacgtctggtaggagtaacttaattgaagtttgacacatgcaggg |
320 |
Q |
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|
|||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7197517 |
gtaaatatgtaccaaaacaaagaatttggatgtctgt--ctggtagaattatgattacgtctggtaggagtaacttaattgaagtttgacacttgcaggg |
7197614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 7204476 - 7204593
Alignment:
| Q |
4 |
tacattatatttgttattatcctcaccgccaccctcactttcttttcttttaaactaaat-aaaaggatagtttcaataattcaatttagtcctttcttc |
102 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |||| ||||||||||| ||||||||||| |||||||| |
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|
| T |
7204476 |
tacattatatttgttattatcgtcaccgccaccttcactttctcttcttttaaaccaaataaaaaggatagt--------ttcaatttagtgctttcttc |
7204567 |
T |
|
| Q |
103 |
cttataattaaagactttaggtgatt |
128 |
Q |
| |
|
||||||||| |||||||||||||||| |
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|
| T |
7204568 |
cttataattgaagactttaggtgatt |
7204593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 7197281 - 7197396
Alignment:
| Q |
6 |
cattatatttgttattatcctcaccgccaccctcactttcttttcttttaaa-ctaaataaaaggatagtttcaataattcaatttagtcctttcttcct |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||| ||||| ||||| ||||||||||| ||||||||| |
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|
| T |
7197281 |
cattatatttgttattatcctcaccgccaccttcactttctcttcttttaaatctaataaaaagtatagt--------ttcaatttagtgctttcttcca |
7197372 |
T |
|
| Q |
105 |
tataattaaagactttaggtgatt |
128 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
7197373 |
tataattgaagactttaggtgatt |
7197396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 314 - 482
Target Start/End: Original strand, 45388627 - 45388789
Alignment:
| Q |
314 |
tgcagggccattgtgatgtttggcttgaatgcgctcagtgggaggcacaagattagtaacactagtaatgtttgggaaggagcctgggactctaaaaatg |
413 |
Q |
| |
|
||||||||||| |||| |||||||||||||| ||| ||||||||||| | |||||| |||| ||||||| ||||| ||||||| ||| ||||| |
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|
| T |
45388627 |
tgcagggccatggtgacttttggcttgaatgcactccgtgggaggcaccaaattagtc------gtaaggtttggggaggagactgggaccctacaaatg |
45388720 |
T |
|
| Q |
414 |
cttatgattttataaagtacactgtttcaaagggatacaagattgatgcatgggaatttggtatgacaa |
482 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| | |||| | |||||| ||||||| ||||||| ||||| |
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|
| T |
45388721 |
cttatgattttataaattacactatttcaaaagaatacgaaattgattcatgggagtttggtaagacaa |
45388789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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