View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1383_low_9 (Length: 505)
Name: NF1383_low_9
Description: NF1383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1383_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 30 - 496
Target Start/End: Original strand, 52562984 - 52563452
Alignment:
| Q |
30 |
tttcacatcgttcttccagagtcccaccaccgaatatgaaaaagtggacattttttcaactttacagtgaggatattttagtagtaatgcagtgatgaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52562984 |
tttcacatcgttcttccagagtcccaccaccgaatatgaaaa-gtggacattttttcaactttacagtgaggatattttagtagtaatgcagtgatgaaa |
52563082 |
T |
|
| Q |
130 |
agtaaaaaactactttctgcggataagcttttgtcatacgtatgtatggggtcagcgtagtagcattccacacactccatatattttgtcttttttattt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52563083 |
agtaaaaaactactttctgcggataagcttttgtcatacgtatgtatggggtcagcgtagtagcattccacacactccatatattttgtcttttttattt |
52563182 |
T |
|
| Q |
230 |
gtcttctttgtctctcatcaactcacgtgaatgtcttagtaatatttcagtaattaccattttttccctcgtattttccttcatatatatgcttactgct |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52563183 |
gtcttctttgtctctcatcaactcacgtgaatgtcttagtaatatttcagtaattaacattttttccctcgtattttccttcatatatatgcttactgct |
52563282 |
T |
|
| Q |
330 |
cttgtttgaaaattaactattt---ttgttgttgttgttggatttttgtatattctctcaacttgaagcaatctcatttgaagtacaaatatagaaacct |
426 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52563283 |
cttgtttgaaaattaactatttttgttgttgttgttgttggatttttatatattctctcaacttgaagcaatctcatttgaagtacaaatatagaaacct |
52563382 |
T |
|
| Q |
427 |
cttctcataattcaagtcttagttgctcatattgtatgactgtaatttcttctattaaactcaatctctg |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52563383 |
cttctcataattcaagtcttagttgctcatattgtatgactgtaatttcttctattaaactcaatctctg |
52563452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University