View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13840_high_11 (Length: 341)
Name: NF13840_high_11
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13840_high_11 |
 | |
|
| [»] scaffold0361 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 6448412 - 6448728
Alignment:
| Q |
18 |
cacttccatctacattaaggatcactgagtcttgattaactcgttgtcaagaaacctctcgacaaagtttaagtgcattttactccttaatattaccaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
6448412 |
cacttccatctacattaaggatcactgagtcttgattaactcgttgtcaagaaacctctcgacaaggtttaagagcattttactccttaatattaccaaa |
6448511 |
T |
|
| Q |
118 |
gcagttctagccacttgaagttgagataaaatagttgttttgcattaaaagttcccttaaataaacaaattgact-aaaaattagaagccttcgttcatc |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6448512 |
gcagttctagccacttgaggttgagataaaatagttgttttgcattaaaa-ttcccttaaataaacaaattgactaaaaaattagaagccttcgttcatc |
6448610 |
T |
|
| Q |
217 |
aagcaacataagtcaaatccactcatatgtagttaaatttaagcacgtacttttgacagcaaatacatcatgtttgtttaaggccaaactgacatttgtg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6448611 |
aagcaacataagtcaaatccactcatatgtagttaaatttaagcacgtacttttgacagcaaatacatcatgtttgtttaaggccaaactgacatttgtg |
6448710 |
T |
|
| Q |
317 |
ttcaagaattgccctttg |
334 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
6448711 |
ttcaagaattgccttttg |
6448728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 6197 - 6087
Alignment:
| Q |
18 |
cacttccatctacattaaggatcactgagtcttgattaactcgttgtcaagaaacctctcgacaaagtttaagtgcattttactccttaatattac-caa |
116 |
Q |
| |
|
|||| ||||||| |||||| |||| ||| || |||||| ||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||| || |
|
|
| T |
6197 |
cactcccatctatattaagaatcattgaatcatgattacctcgttgctgagaaatctctcgacaaggtttaagagcattttactccttaatattactgaa |
6098 |
T |
|
| Q |
117 |
agcagttctag |
127 |
Q |
| |
|
||||||||||| |
|
|
| T |
6097 |
agcagttctag |
6087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 30881244 - 30881114
Alignment:
| Q |
26 |
tctacattaaggatcactgagtcttgattaactcgttgtcaagaaacctctcgacaaagtttaagtgcattttactccttaatatta-ccaaagcagttc |
124 |
Q |
| |
|
|||||||||||||||| | ||| |||||| ||||||||||||| |||||||||||| ||||||| ||||| | ||| |||||||| | ||| |||| |
|
|
| T |
30881244 |
tctacattaaggatcatcgtgtcatgattacctcgttgtcaagagacctctcgacaaggtttaagagcattctgctcaataatattatcaaaaatagtta |
30881145 |
T |
|
| Q |
125 |
tagccacttgaagttgagataaaatagttgt |
155 |
Q |
| |
|
||||||||| || |||||||| ||||||||| |
|
|
| T |
30881144 |
tagccacttaaaattgagatacaatagttgt |
30881114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 45486590 - 45486497
Alignment:
| Q |
24 |
catctacattaaggatcactgagtcttgattaactcgttgtcaagaaacctctcgacaaagtttaagtgcattttactccttaatattaccaaa |
117 |
Q |
| |
|
|||||||||||| ||||| || || || ||| ||||||| || | |||||||||||| ||||||| |||||| |||| ||||||||||||| |
|
|
| T |
45486590 |
catctacattaacgatcagtgtatcatgcttacctcgttgcaaacatacctctcgacaagttttaagttcattttgctccctaatattaccaaa |
45486497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University