View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13840_high_12 (Length: 325)
Name: NF13840_high_12
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13840_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 4 - 308
Target Start/End: Complemental strand, 29350631 - 29350331
Alignment:
| Q |
4 |
cagagatcctaaaaatatcaacttgatagaatacatctttgggttctttcgaaaactcagacgcaatatccatccccaagatactcttagagattgcagg |
103 |
Q |
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| T |
29350631 |
cagagatcctaaagatatcacct--atagaatatatctttgggttctttcgaaatctcagacgcaatatccatccctaagatactcttagagattgcagg |
29350534 |
T |
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| Q |
104 |
atcaacagcgttgttaagccatggcatgatcatggcgttgggtctatcccaagctatagaaccatgatcttcatatgaaggtcttggcgtaaggcgcaat |
203 |
Q |
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| T |
29350533 |
atcaacagagttgttaagccatggcatgatcatggcgttgggtctattccaagctatagaaccatgatcttcatatgaaggtcttg--gtaaggtgccat |
29350436 |
T |
|
| Q |
204 |
ttatgaattgaagcttgtactttgatctcaaagcaactagttggtaaggctcaccaagcaacaggtattaaactcttctattcatgcttgattgttattt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29350435 |
ttatgaattgaagcttgtactttgatctcaaagcaactagttggtaaggctcaccaagcaacaggtattaaactcttctattcatgcttgattgttattt |
29350336 |
T |
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| Q |
304 |
acaat |
308 |
Q |
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||||| |
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| T |
29350335 |
acaat |
29350331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 33304912 - 33304729
Alignment:
| Q |
5 |
agagatcctaaaaatatcaacttgatagaatacatctttgggttctttcgaaaactcagacgcaatatccatccccaagatactcttagagattgcagga |
104 |
Q |
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| T |
33304912 |
agagatcctaaaaatatcaccttgatagaatctatccttgagttctttccaaattttagaagcagtgtccatccataggatactct--gatatttcagga |
33304815 |
T |
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| Q |
105 |
tcaacagcgttgttaagccatggcatgatcatggcgttgggtctatcccaagctatagaaccatgatcttcatatgaaggtcttgg |
190 |
Q |
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| T |
33304814 |
tcaacagatttgttgagccatgaaatgatcatggtattacacctatcccaagctatagaatcatgatcataatttggaggtcttgg |
33304729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 47805753 - 47805801
Alignment:
| Q |
249 |
aaggctcaccaagcaacaggtattaaactcttctattcatgcttgattg |
297 |
Q |
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| T |
47805753 |
aaggctcaccaagcaccaggtattaaacccttttattcatacttaattg |
47805801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 52227304 - 52227348
Alignment:
| Q |
249 |
aaggctcaccaagcaacaggtattaaactcttctattcatgcttg |
293 |
Q |
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| T |
52227304 |
aaggctcaccaagcaccaggtattaaacccttttattcatacttg |
52227348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 19985494 - 19985454
Alignment:
| Q |
268 |
gtattaaactcttctattcatgcttgattgttatttacaat |
308 |
Q |
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| T |
19985494 |
gtattaaactcctctattcatgcatgattgttatttacaat |
19985454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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