View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13840_high_2 (Length: 604)
Name: NF13840_high_2
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13840_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 549; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 17 - 594
Target Start/End: Original strand, 4145093 - 4145670
Alignment:
| Q |
17 |
catcatcgtcgacacctaaacgccaaccaaatagatattcggtggacaatcttggcgttccgagaaaaacccttccattccatggaccagttctccaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4145093 |
catcatcgtcgacacctaaacgccaaccaaatagatattcggttgacaatcttggcgttccgagaaaaactcttccattccatggaccagttctccaata |
4145192 |
T |
|
| Q |
117 |
aannnnnnnatctttccaaatgaaaacttctggtacatccaatctttcaacactaattgtaaaatgtcccgaagaaggatcattgtcactttttcttgct |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4145193 |
aatttttttatctttccaaatgaaaacttctggtacatccaatctttcaacactaattgtaaaatgtcccgaagaaggatcattgtcactttttcttgct |
4145292 |
T |
|
| Q |
217 |
acaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4145293 |
acaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctc |
4145392 |
T |
|
| Q |
317 |
cagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4145393 |
cagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatt |
4145492 |
T |
|
| Q |
417 |
tggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttg |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4145493 |
tggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttg |
4145592 |
T |
|
| Q |
517 |
gtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4145593 |
gtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
4145670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 17 - 594
Target Start/End: Original strand, 4134291 - 4134868
Alignment:
| Q |
17 |
catcatcgtcgacacctaaacgccaaccaaatagatattcggtggacaatcttggcgttccgagaaaaacccttccattccatggaccagttctccaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134291 |
catcatcgtcgacacctaaacgccaaccaaatagatattcggttgacaatcttggcgttccgagaaaaacccttccattccatggaccagttctccaata |
4134390 |
T |
|
| Q |
117 |
aannnnnnnatctttccaaatgaaaacttctggtacatccaatctttcaacactaattgtaaaatgtcccgaagaaggatcattgtcactttttcttgct |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134391 |
aatttttttatctttccaaatgaaaacttctggtacatccaatctttcaacactaattgtaaaatgtcccgaagaaggatcattgtcactttttcttgct |
4134490 |
T |
|
| Q |
217 |
acaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4134491 |
acaaaagcaatttgcttacctgtaactttattagatgcaattttcatcgatggaacagctgaatctgcagggtgtgtgaaactatcccagattgttgctc |
4134590 |
T |
|
| Q |
317 |
cagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
4134591 |
cagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatgaaatgtttgttgaccaaatgatgataccatt |
4134690 |
T |
|
| Q |
417 |
tggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttg |
516 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134691 |
tggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttg |
4134790 |
T |
|
| Q |
517 |
gtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134791 |
gtctcattgatgtaccaaattcctaagtaacggttgttcgaatttaatgggctgaaaaatcctagcttgaggtctgtg |
4134868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 73 - 586
Target Start/End: Original strand, 4123802 - 4124315
Alignment:
| Q |
73 |
gttccgagaaaaacccttccattccatggaccagttctccaataaannnnnnnatctttccaaatgaaaacttctggtacatccaatctttcaacactaa |
172 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| || ||| | ||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
4123802 |
gttccgagaaaaaccaatccattccatggaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactag |
4123901 |
T |
|
| Q |
173 |
ttgtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaac |
272 |
Q |
| |
|
|| | ||||||| |||||||||||||| ||||||||||||| |||||| | |||| ||||||||| |||| ||||| ||||||| |||| | |||||| |
|
|
| T |
4123902 |
ctgaataatgtcctgaagaaggatcattatcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaac |
4124001 |
T |
|
| Q |
273 |
agctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaa |
372 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| |||||||||| |
|
|
| T |
4124002 |
agctgcatctgcagggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaa |
4124101 |
T |
|
| Q |
373 |
tttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttg |
472 |
Q |
| |
|
||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4124102 |
tttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtgaattgtgactattccatttg |
4124201 |
T |
|
| Q |
473 |
aatctttgagtggttgatctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaa |
572 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
4124202 |
aatctttgagtggttgatctctgtttgcaatccatatattgttggtctcattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaa |
4124301 |
T |
|
| Q |
573 |
aaatcctagcttga |
586 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4124302 |
aaatcctagcttga |
4124315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 75 - 586
Target Start/End: Original strand, 4153154 - 4153665
Alignment:
| Q |
75 |
tccgagaaaaacccttccattccatggaccagttctccaataaannnnnnnatctttccaaatgaaaacttctggtacatccaatctttcaacactaatt |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||||||| |||| | |
|
|
| T |
4153154 |
tccgagaaaaacccttccattccatggacctgttctccaatgaatatttttatctttccaaatgaaaacttctggtgcatccaatctttcaagactagct |
4153253 |
T |
|
| Q |
175 |
gtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaacag |
274 |
Q |
| |
|
| | ||||||| |||||||||||||| ||||||||||||| |||||| | |||| ||||||||| |||| ||||| ||||||| |||| | |||||||| |
|
|
| T |
4153254 |
gaataatgtcctgaagaaggatcattatcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaacag |
4153353 |
T |
|
| Q |
275 |
ctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatt |
374 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||| ||| |||| ||||| | ||||||||| |||| |||| |||||| |||||||||||| |
|
|
| T |
4153354 |
ctgcatctgcagggtgtgtgaaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatt |
4153453 |
T |
|
| Q |
375 |
tgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaa |
474 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4153454 |
tgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattataaaatttccatctttgtgaattgtgacaattccatttgaa |
4153553 |
T |
|
| Q |
475 |
tctttgagtggttgatctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaaa |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
4153554 |
tctttgagtggttgatctctgtttgcaatccatatattgttggtcttattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaaa |
4153653 |
T |
|
| Q |
575 |
atcctagcttga |
586 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4153654 |
atcctagcttga |
4153665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 75 - 586
Target Start/End: Original strand, 4163507 - 4164024
Alignment:
| Q |
75 |
tccgagaaaaacccttccattccatggaccagttctccaataaannnnnnnatctttccaaatgaaaacttctggtacatccaatctttcaacactaatt |
174 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| || ||| | |||||| |||||||||||| ||||||||||||||| ||| | |
|
|
| T |
4163507 |
tccgagaaaaaccgttccattccatggaccagttctccaatgaattctcttatcataccaaataaaaacttctggtgcatccaatctttcaagacttcct |
4163606 |
T |
|
| Q |
175 |
gtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaacag |
274 |
Q |
| |
|
|| ||||||| |||||||||||||| ||||||||||||| |||||||| || | ||| || || |||| |||||||||||| |||||| |||||||| |
|
|
| T |
4163607 |
atataatgtcctgaagaaggatcattttcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacag |
4163706 |
T |
|
| Q |
275 |
ctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatt |
374 |
Q |
| |
|
| | ||| | |||||| |||||||||||||| ||||||| || |||||||||||| |||||||||||||| ||| ||||| |||||| |||||| ||||| |
|
|
| T |
4163707 |
cggcatccgcagggtgagtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatt |
4163806 |
T |
|
| Q |
375 |
tgttgaa----ga--tgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattcca |
468 |
Q |
| |
|
| ||||| || ||||||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4163807 |
tattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtgaattgtgactattcca |
4163906 |
T |
|
| Q |
469 |
tttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggc |
568 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
4163907 |
tttgaatccttgagtggttgatctctgtttgcaatccatatattgttggtctcattgatgtaccaaattcctaggtaacggttggttgaatttaatgggc |
4164006 |
T |
|
| Q |
569 |
tgaaaaatcctagcttga |
586 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4164007 |
tgaaaaatcctagcttga |
4164024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University