View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13840_low_10 (Length: 430)

Name: NF13840_low_10
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13840_low_10
NF13840_low_10
[»] chr3 (21 HSPs)
chr3 (16-408)||(9348594-9348986)
chr3 (16-397)||(9370248-9370629)
chr3 (259-336)||(9341567-9341644)
chr3 (258-386)||(9493998-9494126)
chr3 (259-348)||(9613103-9613192)
chr3 (19-101)||(9341314-9341396)
chr3 (263-328)||(9403059-9403124)
chr3 (259-321)||(9353757-9353819)
chr3 (263-328)||(9421298-9421363)
chr3 (41-85)||(9407962-9408006)
chr3 (258-381)||(9616652-9616778)
chr3 (42-85)||(9426170-9426213)
chr3 (42-85)||(9441257-9441300)
chr3 (284-381)||(9625705-9625802)
chr3 (263-387)||(9344679-9344803)
chr3 (277-333)||(9449146-9449202)
chr3 (258-333)||(9654636-9654714)
chr3 (42-85)||(9417167-9417210)
chr3 (259-321)||(9377942-9378004)
chr3 (52-101)||(9353538-9353587)
chr3 (258-327)||(9433703-9433772)
[»] chr2 (1 HSPs)
chr2 (258-333)||(20693526-20693601)
[»] chr1 (6 HSPs)
chr1 (230-333)||(8813611-8813714)
chr1 (260-336)||(235947-236023)
chr1 (231-333)||(229885-229987)
chr1 (263-333)||(250616-250686)
chr1 (278-323)||(4440665-4440710)
chr1 (52-88)||(250825-250861)
[»] chr6 (6 HSPs)
chr6 (263-323)||(28133077-28133137)
chr6 (263-333)||(28177179-28177249)
chr6 (263-323)||(28177102-28177162)
chr6 (263-333)||(28219946-28220016)
chr6 (263-323)||(7047639-7047699)
chr6 (263-323)||(28219869-28219929)
[»] scaffold0038 (2 HSPs)
scaffold0038 (263-333)||(20444-20514)
scaffold0038 (263-323)||(20367-20427)


Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Original strand, 9348594 - 9348986
Alignment:
Q  16 tgagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  9348594 tgagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgatgaattggggtttttccatgttgtggt 9348693  T
Q  116 ggcttgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtctt 215  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |     
T  9348694 ggcctgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgagagatggtagtttc 9348793  T
Q  216 cggaatcatgtacgagtgggaatttgataggtgaaatttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaat 315  Q
     ||||||||||||||||||||||  ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9348794 tggaatcatgtacgagtgggaataggatgggtgaagtttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaat 9348893  T
Q  316 gagatcgatttcgttgtcaatgaattgtgatatcaaactcacaagctccattgggagtgcagaccaatctgccgtagatgatgttgatgtgcc 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9348894 gagatcgatttcgttgtcaatgaattgtgatatcaaactcacaagctccattgggagtgcagaccaatctgccgtagatgatgttgatgtgcc 9348986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 9370248 - 9370629
Alignment:
Q  16 tgagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggt 115  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9370248 tgagatgactgggttgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggt 9370347  T
Q  116 ggcttgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtctt 215  Q
    |||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  9370348 ggcttgacaaggacgagagtgcgtttggagaggtaacataatggtgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtttc 9370447  T
Q  216 cggaatcatgtacgagtgggaatttgataggtgaaatttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaat 315  Q
    ||||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9370448 cggaatcatatacgagtgggaatttgatgggtgaagtttgaagatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaat 9370547  T
Q  316 gagatcgatttcgttgtcaatgaattgtgatatcaaactcacaagctccattgggagtgcagaccaatctgccgtagatgat 397  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9370548 gagatcgatttcgttgtcgatgaattgtgatatcaaactcacaagctccatcgggagtgcagaccaatctgccgtagatgat 9370629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 9341567 - 9341644
Alignment:
Q  259 atggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaat 336  Q
    |||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||||    
T  9341567 atggtgatttgggatggaggaagaacgccaattggaacaaatggatcgaaatcgaatgagatcgatttcggtgtcaat 9341644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 386
Target Start/End: Complemental strand, 9494126 - 9493998
Alignment:
Q  258 gatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatatcaaactcac 357  Q
    ||||||| ||| ||||||| ||||||||||||||| |||| | ||||||||| |||||||||||||||||  |||| ||    |||||||||| | ||||    
T  9494126 gatggtgctttcgaatggaagaagagcgccaattgcaacagactgatcgaaagcgaatgagatcgatttcagtgtcgattccctgtgatatcagattcac 9494027  T
Q  358 aagctccattgggagtgcagaccaatctg 386  Q
    ||| ||||| |||||||||||||||||||    
T  9494026 aagatccatcgggagtgcagaccaatctg 9493998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 259 - 348
Target Start/End: Complemental strand, 9613192 - 9613103
Alignment:
Q  259 atggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatat 348  Q
    |||||||||||| |||||||||||||||||  | |||||||||||||||||| |||| || |||| ||||||||||||| ||||||||||    
T  9613192 atggtgatttgggatggaggaagagcgccacgttgaacaaattgatcgaaaatgaataaggtcgagttcgttgtcaatgcattgtgatat 9613103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 9341314 - 9341396
Alignment:
Q  19 gatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt 101  Q
    ||||| |||||  |||| ||| ||||| |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||    
T  9341314 gatgagtgggtgaaagagtttggttttgccatgtgagttttgagtaaatctaatcaaccaaggacgacgaggaattagggttt 9341396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 9403059 - 9403124
Alignment:
Q  263 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcg 328  Q
    |||||| | ||||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||    
T  9403059 tgatttcggatggaagaagaacgccaattggaacaaactgatcgaaagcgaatgagatcgatttcg 9403124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 9353757 - 9353819
Alignment:
Q  259 atggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatc 321  Q
    ||||| ||||||||| | ||||||||||||| | ||||||| |||||||||||||||||||||    
T  9353757 atggtcatttggaatcggggaagagcgccaagttgaacaaactgatcgaaaacgaatgagatc 9353819  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 9421298 - 9421363
Alignment:
Q  263 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcg 328  Q
    |||||| | ||||| || || |||||||||||||||| ||||||||| ||||||||||||||||||    
T  9421298 tgatttcggatggaagatgaacgccaattggaacaaactgatcgaaagcgaatgagatcgatttcg 9421363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 9407962 - 9408006
Alignment:
Q  41 gtttttccatgtgagttttgtgtaactctaatcaaccaaggacga 85  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  9407962 gttttgccatgtgagttttgggtaactctaatcaaccaaggacga 9408006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 381
Target Start/End: Complemental strand, 9616778 - 9616652
Alignment:
Q  258 gatggtgatttggaatggaggaagagcg---ccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatatcaaact 354  Q
    ||||||||||||  | ||||||||||||   |||||||||||| |  |||||||| |||||||||||||| | |||||||||   || |||||||| | |    
T  9616778 gatggtgatttgagacggaggaagagcgacgccaattggaacataccgatcgaaagcgaatgagatcgatcttgttgtcaattccttttgatatcagatt 9616679  T
Q  355 cacaagctccattgggagtgcagacca 381  Q
     | ||||||| ||||||| ||||||||    
T  9616678 tagaagctcccttgggagagcagacca 9616652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 9426170 - 9426213
Alignment:
Q  42 tttttccatgtgagttttgtgtaactctaatcaaccaaggacga 85  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  9426170 ttttgccatgtgagttttgggtaactctaatcaaccaaggacga 9426213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 9441300 - 9441257
Alignment:
Q  42 tttttccatgtgagttttgtgtaactctaatcaaccaaggacga 85  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  9441300 ttttgccatgtgagttttgggtaactctaatcaaccaaggacga 9441257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 9625802 - 9625705
Alignment:
Q  284 cgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatatcaaactcacaagctccattgggagtgcagacca 381  Q
    ||||||||||||||||  |||||||| || ||||||||||||||| |||||||   ||| || |||| | ||| ||||||| |||||||  |||||||    
T  9625802 cgccaattggaacaaacagatcgaaagcgtatgagatcgatttcgatgtcaattctttgcgaaatcatattcaaaagctcctttgggagatcagacca 9625705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 387
Target Start/End: Original strand, 9344679 - 9344803
Alignment:
Q  263 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaatgaattgtgatatcaaactcacaagct 362  Q
    ||||| || ||||| |||||| |||||||||||||||  |||||||| ||||||||||| | ||| ||||| | |  ||| ||||| | | | | ||| |    
T  9344679 tgattggggatggaagaagagtgccaattggaacaaacagatcgaaagcgaatgagatcaagttcattgtcgaggcgttgcgatataagattgagaagat 9344778  T
Q  363 ccattgggagtgcagaccaatctgc 387  Q
    || |||||||| |||||||||||||    
T  9344779 cctttgggagttcagaccaatctgc 9344803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 9449146 - 9449202
Alignment:
Q  277 ggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 333  Q
    ||||| || |||| ||||||||| ||||||||||||||||||||||| ||| |||||    
T  9449146 ggaagtgcaccaaatggaacaaactgatcgaaaacgaatgagatcgagttcattgtc 9449202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 9654714 - 9654636
Alignment:
Q  258 gatggtgatttggaatggaggaagagcg---ccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 333  Q
    ||||||||||||| | ||||||||||||   ||||||||||||||  |||||||| ||||| | |||||||||| ||||    
T  9654714 gatggtgatttgggacggaggaagagcgacgccaattggaacaaaccgatcgaaagcgaatcatatcgatttcgatgtc 9654636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 9417167 - 9417210
Alignment:
Q  42 tttttccatgtgagttttgtgtaactctaatcaaccaaggacga 85  Q
    |||| |||||||||||||| |||||||| |||||||||||||||    
T  9417167 ttttgccatgtgagttttgggtaactctgatcaaccaaggacga 9417210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 9377942 - 9378004
Alignment:
Q  259 atggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatc 321  Q
    ||||| |||||||||||  |||||| ||||| | |||||||  ||||||||||||||||||||    
T  9377942 atggtcatttggaatgggagaagagtgccaagttgaacaaaccgatcgaaaacgaatgagatc 9378004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 9353538 - 9353587
Alignment:
Q  52 tgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt 101  Q
    ||||||||| |||| ||  ||||||||||| |||||||||||||||||||    
T  9353538 tgagttttgggtaattcgtatcaaccaaggccgacgacgaattagggttt 9353587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 9433703 - 9433772
Alignment:
Q  258 gatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttc 327  Q
    |||| |||||| | || |||||||| ||||||| |||||||| |||||| || ||||||||||| |||||    
T  9433703 gatgatgattttggatcgaggaagaacgccaatgggaacaaactgatcggaagcgaatgagatcaatttc 9433772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 20693601 - 20693526
Alignment:
Q  258 gatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 333  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||||| |||| ||||    
T  20693601 gatggtgatttgggatggaggaagaacgccaattggaacaaactgatcgaaagcgaatgagatcgagttcgctgtc 20693526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 230 - 333
Target Start/End: Complemental strand, 8813714 - 8813611
Alignment:
Q  230 agtgggaatttgataggtgaaatttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgt 329  Q
    |||||||||||||| | | |||| | ||| ||||||||||| ||||| |||||  ||||||||| |||||||||||| || |||||||||||||||||||    
T  8813714 agtgggaatttgatggttaaaatgttacggtggtgatttgggatggaagaagaatgccaattggtacaaattgatcggaagcgaatgagatcgatttcgt 8813615  T
Q  330 tgtc 333  Q
    ||||    
T  8813614 tgtc 8813611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 235947 - 236023
Alignment:
Q  260 tggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtcaat 336  Q
    |||||||| || ||||| ||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||||    
T  235947 tggtgattcgggatggaagaagaacgccaattggtacaaattgatcggaagcgaatgagatcgatttcgttgtcaat 236023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 229885 - 229987
Alignment:
Q  231 gtgggaatttgataggtgaaatttgacgatggtgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgtt 330  Q
    ||||||||||||| | | | || | ||| ||||||||||| ||||| ||||| |||||||||||||| |||||||| || ||||||| ||||||||||||    
T  229885 gtgggaatttgatggttaacatgtcacggtggtgatttgggatggaagaagaacgccaattggaacagattgatcggaagcgaatgatatcgatttcgtt 229984  T
Q  331 gtc 333  Q
    |||    
T  229985 gtc 229987  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 250686 - 250616
Alignment:
Q  263 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 333  Q
    |||||||| ||||| | ||| |||||||||||||| |||||||| || | | |||||||||||| ||||||    
T  250686 tgatttgggatggaagcagaacgccaattggaacatattgatcggaagctattgagatcgattttgttgtc 250616  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 4440665 - 4440710
Alignment:
Q  278 gaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 323  Q
    |||||||||||  |||||||| ||||||| ||||||||||||||||    
T  4440665 gaagagcgccatgtggaacaagttgatcggaaacgaatgagatcga 4440710  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 250861 - 250825
Alignment:
Q  52 tgagttttgtgtaactctaatcaaccaaggacgacga 88  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  250861 tgagttttgtgtaattctaaacaaccaaggacgacga 250825  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 28133077 - 28133137
Alignment:
Q  263 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 323  Q
    |||||||||||||| |||||| |||||||| |||||| ||||| |||||||||| ||||||    
T  28133077 tgatttggaatggaagaagagtgccaattgaaacaaactgatcaaaaacgaatgtgatcga 28133137  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 28177179 - 28177249
Alignment:
Q  263 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 333  Q
    |||||||||||||| |||||| | |||||||||| ||   ||||||||||||||||||||| ||| |||||    
T  28177179 tgatttggaatggaagaagagtgtcaattggaacgaacatatcgaaaacgaatgagatcgagttcattgtc 28177249  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 28177162 - 28177102
Alignment:
Q  263 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 323  Q
    ||||||||| | || |||||| |||||||||||||||  |||||||||| |||||||||||    
T  28177162 tgatttggagttgaagaagagtgccaattggaacaaacagatcgaaaacaaatgagatcga 28177102  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 28219946 - 28220016
Alignment:
Q  263 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 333  Q
    ||||||||||| || |||||| | |||||| ||| ||  |||||||||||||||||||||| ||| |||||    
T  28219946 tgatttggaatagaagaagagtgtcaattgaaacgaacagatcgaaaacgaatgagatcgagttcattgtc 28220016  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 7047639 - 7047699
Alignment:
Q  263 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 323  Q
    |||||||| | |||||||||||||||  | ||||||| |||||| || |||||||||||||    
T  7047639 tgatttgggacggaggaagagcgccatgttgaacaaactgatcggaagcgaatgagatcga 7047699  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 28219929 - 28219869
Alignment:
Q  263 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 323  Q
    ||||||||| | || |||||| ||||||||||| |||  ||||||||| ||||||||||||    
T  28219929 tgatttggagttgaagaagagtgccaattggaataaacagatcgaaaatgaatgagatcga 28219869  T

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Target: scaffold0038 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 20444 - 20514
Alignment:
Q  263 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcgatttcgttgtc 333  Q
    ||||||||||| || |||||| | |||||| ||| ||  |||||||||||||||||||||| ||| |||||    
T  20444 tgatttggaatagaagaagagtgtcaattgaaacgaacagatcgaaaacgaatgagatcgagttcattgtc 20514  T

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Target: scaffold0038; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 20427 - 20367
Alignment:
Q  263 tgatttggaatggaggaagagcgccaattggaacaaattgatcgaaaacgaatgagatcga 323  Q
    ||||||||| | || |||||| ||||||||||| |||  ||||||||| ||||||||||||    
T  20427 tgatttggagttgaagaagagtgccaattggaataaacagatcgaaaatgaatgagatcga 20367  T

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