View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13840_low_11 (Length: 380)
Name: NF13840_low_11
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13840_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 361
Target Start/End: Original strand, 41125976 - 41126329
Alignment:
| Q |
8 |
cgaagaatatagagagtaatcaaagcatttttcacagttttctgaaagcttttcctcggcttttgaagcttgatccatcttttatccttcgacaacaacg |
107 |
Q |
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| T |
41125976 |
cgaagaaaatagagagtaatcaaagcatttttcacagttttctgaaagcttttcctcggcttttgaagcttgatccatcttttatccttcgacaacaacg |
41126075 |
T |
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| Q |
108 |
atacctcaggtttcaaaccagttagatcaaacttccatgcagtaacctccatgaaaatcgtctgcaacccattgtcagcagatccatgcaaaaatatctt |
207 |
Q |
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| T |
41126076 |
atacctcaggtttcaaaccagttagatcaaacttccatgcagtaacctccatgaaaattgtctgcaacccattgtcagcagatccatgcaaaaatatctt |
41126175 |
T |
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| Q |
208 |
caaccccttttcggtatcatcaactttggaaaccttagaagcgccccatttaaacggtagaacagagaaacacacgggttcgccatcgttatcttcgaga |
307 |
Q |
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| T |
41126176 |
caaccccttttcggtatcatcaactttggaaaccttagaagcgccccatttaaacggtagaacagagaaacacacgggttcgccatcgttatcttcgaga |
41126275 |
T |
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| Q |
308 |
tgataattggttacatacaaagactgaaactcgatttcagattcagtttcatcc |
361 |
Q |
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| T |
41126276 |
tgataattggttacatacaaagactgaaactcgatttcagattcagtttcatcc |
41126329 |
T |
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