View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13840_low_13 (Length: 333)
Name: NF13840_low_13
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13840_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 1842814 - 1842625
Alignment:
| Q |
17 |
agaataattacctcattaatgaattgattgatttggcttctatctattannnnnnnnnnnnngatagcaacgattcttttatcatctagaaatcctttgt |
116 |
Q |
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| T |
1842814 |
agaataattacctcattaatgaattgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaaatcctttgt |
1842715 |
T |
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| Q |
117 |
aaacagtaccaaaaccacctttgccaatgattaaattctcgtcgaagtctttggtggccttgtttagctgatcttgtgtgaatattttag |
206 |
Q |
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| T |
1842714 |
aaacagtaccaaaaccacctttgccaatgattaaattctcgtcaaagtctttggtggccttgtttagctgatcttgtgtgaatattttag |
1842625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 1868414 - 1868232
Alignment:
| Q |
26 |
acctcattaatgaattgattgatttggcttctatctattannnnnnnnnnnnngatagcaacgattcttttatcatctagaaatcctttgtaaacagtac |
125 |
Q |
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| T |
1868414 |
acctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaagtcctttgaaaacggtac |
1868315 |
T |
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| Q |
126 |
caaaaccacctttgccaatgattaaattctcgtcgaagtctttggtggccttgtttagctgatcttgtgtgaatattttagca |
208 |
Q |
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| T |
1868314 |
caaaaccacctttgccaatgattaaattctcgtcgaagtttttggttgccttgtttagctgatcttgtgtgaatattttagca |
1868232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 1842580 - 1842532
Alignment:
| Q |
275 |
aaaatcaaaccaccattctgctcaaagaatttctctttcattttgatga |
323 |
Q |
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| T |
1842580 |
aaaatcagaccaccattctgctcaaagaatttctctttcattttgatga |
1842532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 1868165 - 1868117
Alignment:
| Q |
275 |
aaaatcaaaccaccattctgctcaaagaatttctctttcattttgatga |
323 |
Q |
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| T |
1868165 |
aaaatcaaaccaccattctgttcgaagaatttctctttcattttgatga |
1868117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 9170959 - 9171053
Alignment:
| Q |
109 |
tcctttgtaaacagtaccaaaaccacctttgccaatgattaaattctcgtcgaagtctttggtggccttgtttagctgatcttgtgtgaatattt |
203 |
Q |
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| T |
9170959 |
tcctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggtggctttcttaagttcctcttctgtgaatattt |
9171053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 9178941 - 9179035
Alignment:
| Q |
109 |
tcctttgtaaacagtaccaaaaccacctttgccaatgattaaattctcgtcgaagtctttggtggccttgtttagctgatcttgtgtgaatattt |
203 |
Q |
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| T |
9178941 |
tcctttgtaaactgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggtggctttcttaagttcctcttctgtgaatattt |
9179035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 9156221 - 9156286
Alignment:
| Q |
109 |
tcctttgtaaacagtaccaaaaccacctttgccaatgattaaattctcgtcgaagtctttggtggc |
174 |
Q |
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||||||| |||| ||||||||||| ||| ||||||||||||| || || ||| ||| ||||||||| |
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| T |
9156221 |
tcctttgaaaactgtaccaaaacctcctctgccaatgattaagttttcatcgtagtttttggtggc |
9156286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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