View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13840_low_15 (Length: 317)
Name: NF13840_low_15
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13840_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 44966327 - 44966026
Alignment:
| Q |
1 |
ttaaaatacagttcatgtggcactagatatatccacatgtatatattcttagtttaccnnnnnnnnnnnnnnnnnnngtgtctatatatagatattgaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| |
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| T |
44966327 |
ttaaaatacagttcatgtggcactagatatatccacatgtatatattcttagtttatcaaataaataaaaataaaaagagtctatatatagatattgaga |
44966228 |
T |
|
| Q |
101 |
agggtaaggtgtcaatttgaacatgacatacatataagtagcaaggcatgtagtatgtggtattagaaaaaaggtagcagcaagcagttaatatgtatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44966227 |
agggtaaggtgtcaatttgaacatgacatacatataagtagcaaggcatgtagtatgtggtattagaaaaaaggtagtagcaagcagttaatatgtatat |
44966128 |
T |
|
| Q |
201 |
ggtccacttctctgcacagcaatgcagctctgccatgccctcgtggacaggacagagcaagtatatttgtgtccttcgtttatttttacttcgtcataat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44966127 |
ggtccacttctctgcacagcaatgcagctctggcatgccctcgtggacaggacagagcaagtatatttgtgtccttcgtttatttttacttcggcataat |
44966028 |
T |
|
| Q |
301 |
ac |
302 |
Q |
| |
|
|| |
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|
| T |
44966027 |
ac |
44966026 |
T |
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