View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13840_low_16 (Length: 295)
Name: NF13840_low_16
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13840_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 43322012 - 43322112
Alignment:
| Q |
18 |
tgaactcacgcaacaagtgaaatattcatgctatatcatgtatataaatgcagccaattaaatccacgattattttagcatcatcgagctgcttagaata |
117 |
Q |
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| T |
43322012 |
tgaactcacgcgacaagtgaaatattcatgctatatcatgtatataa-----gccaattaaatccacgattattttagcatcatcgagctgcttagaata |
43322106 |
T |
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| Q |
118 |
gaacct |
123 |
Q |
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|||||| |
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| T |
43322107 |
gaacct |
43322112 |
T |
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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 189 - 287
Target Start/End: Original strand, 43322177 - 43322275
Alignment:
| Q |
189 |
agagagagaataacaaagtgggcataaatcttacctttgagatgttggtctcctcagnnnnnnngttcttcatgatatgaactttaaattcttcttcat |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43322177 |
agagagagaataacaaagtgggcataaatcttacctttgagatgttggtctcctcagtttttttgttcttcatgatatgaactttaaattcttcttcat |
43322275 |
T |
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