View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13840_low_22 (Length: 236)
Name: NF13840_low_22
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13840_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42475714 - 42475493
Alignment:
| Q |
1 |
tacttgtcaactgcaataatcaaaacttaattaagtaatactcctattaactttgtccatacgcaacaacgctctcataaacagatcctatcatacttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42475714 |
tacttgtcaactgcaataatcaaaacttaattaagtaatactcctattaactttgtccatacgcaacaacgctctcataaacagatcctatcatacttgt |
42475615 |
T |
|
| Q |
101 |
acatgagatttattaaaggttgctataaaattggtgaagatgccatgccagccttttttgaataatgatggtatgccaacctatttaaagagtaatacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42475614 |
acatgagatttattaaaggttgctataaaattggtgaagatgccatgccagccttttttgaataatgatggtatgccaacctatttaaagagtaatacta |
42475515 |
T |
|
| Q |
201 |
taagtctctaacataataactt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42475514 |
taagtctctaacataataactt |
42475493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University