View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13840_low_3 (Length: 589)

Name: NF13840_low_3
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13840_low_3
NF13840_low_3
[»] chr4 (15 HSPs)
chr4 (83-573)||(26315236-26315730)
chr4 (34-80)||(14210441-14210487)
chr4 (34-80)||(14211410-14211456)
chr4 (34-80)||(14212361-14212407)
chr4 (34-80)||(14213330-14213376)
chr4 (34-80)||(14214298-14214344)
chr4 (34-80)||(14215267-14215313)
chr4 (34-80)||(14218138-14218184)
chr4 (34-80)||(14219108-14219154)
chr4 (34-80)||(14220077-14220123)
chr4 (34-80)||(14221028-14221074)
chr4 (34-80)||(14221997-14222043)
chr4 (34-80)||(14222966-14223012)
chr4 (42-80)||(37619002-37619040)
chr4 (32-80)||(14586858-14586906)
[»] chr5 (5 HSPs)
chr5 (251-462)||(11755402-11755606)
chr5 (29-80)||(4077842-4077893)
chr5 (30-80)||(40946714-40946764)
chr5 (29-79)||(16352147-16352197)
chr5 (44-84)||(33553600-33553640)
[»] chr1 (3 HSPs)
chr1 (1-84)||(10011957-10012040)
chr1 (32-80)||(29836243-29836291)
chr1 (32-80)||(40981614-40981662)
[»] chr8 (3 HSPs)
chr8 (252-325)||(35219835-35219908)
chr8 (30-80)||(26955416-26955466)
chr8 (29-80)||(38681141-38681192)
[»] chr3 (3 HSPs)
chr3 (32-80)||(29129134-29129182)
chr3 (44-80)||(44712575-44712611)
chr3 (29-80)||(52126889-52126940)
[»] chr7 (4 HSPs)
chr7 (29-80)||(24759478-24759529)
chr7 (32-80)||(1971096-1971144)
chr7 (32-77)||(11503211-11503256)
chr7 (12-80)||(13761785-13761853)
[»] chr2 (2 HSPs)
chr2 (3-80)||(4768482-4768559)
chr2 (31-80)||(26449097-26449146)
[»] chr6 (3 HSPs)
chr6 (29-84)||(23073454-23073509)
chr6 (40-80)||(2319908-2319948)
chr6 (44-80)||(8840654-8840690)
[»] scaffold0005 (1 HSPs)
scaffold0005 (32-80)||(230468-230516)


Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 83 - 573
Target Start/End: Original strand, 26315236 - 26315730
Alignment:
Q  83 atcaacagcaaaataatttttcattttcaaatataaaatagtctcacttcatcactaggcttttgtgaagttccatcccagttctatgaagc-ttcatgc 181  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26315236 atcaacagtaaagtaatttttcatattcaaatataaaatagtctcacttcatcactaggcttttgtgaagttccatcccagttctatgaagccttcatgc 26315335  T
Q  182 ttagtcatcaacattannnnnnnn----gtaattttagctaaatgtgggattaagataggcaaaatgattatgtatgatgaaaccacaccatgtcatgca 277  Q
    ||||||||||||||||            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26315336 ttagtcatcaacattattttttttttttgtaattttggctaaatgtgggattaagataggcaaaatgattatgtatgatgaaaccacaccatgtcatgca 26315435  T
Q  278 attaaaatttaaaattatcactgaatttttcacaacatgtttagattattgattaactcgctttgtattggaaaattggttatcgtgattctagttgacc 377  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||||    
T  26315436 attaaaatttaaaattatcactgaaattttcacaacatgtttagattattgattaactcgctttgcactggaaaattggttatcatgattctagatgacc 26315535  T
Q  378 ttgatattatcgaattgattagatcaaaagttagtttaaattgaagtgatttgagtttgattataactttgaagttaatttgatgttaaaaagttcaacc 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26315536 ttgatattatcgaattgattagatcaaaagttagtttaaattgaagtgatttgagtttgattataactttgaagttaatttgatgttaaaaagttcaacc 26315635  T
Q  478 aaaacacaaaagtgatcttacatagtatctcaaccaaaatatctcatcaaaaatttactatataatgagttaataatttcttacctaagttcctaa 573  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  26315636 -aaacacaaaagtgatcttacatagtatctcaaccaaaatatctcatcacaaatttactatatgatgagttaataatttcttacctaagttcctaa 26315730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 14210441 - 14210487
Alignment:
Q  34 agggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14210441 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14210487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 14211410 - 14211456
Alignment:
Q  34 agggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14211410 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14211456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 14212361 - 14212407
Alignment:
Q  34 agggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14212361 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14212407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 14213330 - 14213376
Alignment:
Q  34 agggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14213330 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14213376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 14214298 - 14214344
Alignment:
Q  34 agggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14214298 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14214344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 14215267 - 14215313
Alignment:
Q  34 agggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14215267 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14215313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 14218138 - 14218184
Alignment:
Q  34 agggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14218138 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14218184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 14219108 - 14219154
Alignment:
Q  34 agggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14219108 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14219154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 14220077 - 14220123
Alignment:
Q  34 agggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14220077 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14220123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 14221028 - 14221074
Alignment:
Q  34 agggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14221028 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14221074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 14221997 - 14222043
Alignment:
Q  34 agggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14221997 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14222043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 14222966 - 14223012
Alignment:
Q  34 agggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  14222966 agggtttggaaattagggtaagcatgtttgctaggattagatataaa 14223012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 37619002 - 37619040
Alignment:
Q  42 ggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  37619002 ggaattagggtaagcatgtttgctaggattagatataaa 37619040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 14586858 - 14586906
Alignment:
Q  32 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    |||||||| || |||||||||   |||||||||||||||||||||||||    
T  14586858 ttagggttatgcaattaggatttgcatgtttgctaggattagatataaa 14586906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 251 - 462
Target Start/End: Original strand, 11755402 - 11755606
Alignment:
Q  251 tatgatgaaaccacaccatgtcatgcaattaaaatttaaaattatcactgaatttttcacaacatgtttagattattgattaactcgctttgtattggaa 350  Q
    |||||| |||||||||||||||||||||| | |||||| |||||||| ||||||||||| ||||||||||||||        ||||  | || |  |||     
T  11755402 tatgattaaaccacaccatgtcatgcaatcagaatttagaattatcattgaatttttcataacatgtttagattg-------actcattctgcaccggac 11755494  T
Q  351 aattggttatcgtgattctagttgaccttgatattatcgaattgattagatcaaaagttagtttaaattgaagtgatttgagtttgattataactttgaa 450  Q
    |||| |||||||||||||| | | || |||||| |||||||||||||||||||||||||||||| || ||||  ||||||||||||||  |||  |||||    
T  11755495 aatttgttatcgtgattctcgataactttgatactatcgaattgattagatcaaaagttagtttgaagtgaaaagatttgagtttgatattaatattgaa 11755594  T
Q  451 gttaatttgatg 462  Q
    ||||||||||||    
T  11755595 gttaatttgatg 11755606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 4077893 - 4077842
Alignment:
Q  29 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  4077893 ggattagggtttggcaattaggataagcatgtttgctaggattagatataaa 4077842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 40946764 - 40946714
Alignment:
Q  30 gattagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  40946764 gattagggtttggcaattagggtaaacatgtttgctaggattagatataaa 40946714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 16352147 - 16352197
Alignment:
Q  29 ggattagggttttggaattaggataaacatgtttgctaggattagatataa 79  Q
    |||||||||||| | ||||||| ||| ||||||||||||||||||||||||    
T  16352147 ggattagggtttggcaattagggtaagcatgtttgctaggattagatataa 16352197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 33553640 - 33553600
Alignment:
Q  44 aattaggataaacatgtttgctaggattagatataaaagat 84  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  33553640 aattaggataagcatatttgctaggattagatataaaagat 33553600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 10011957 - 10012040
Alignment:
Q  1 aatttaaattatttggagccattttgttggattagggttttggaattaggataaacatgtttgctaggattagatataaaagat 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  10011957 aatttaaattatttggagccattttgttggattagggttttggaattagggtaagcatgtttgctaggattaaatataaaagat 10012040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 29836291 - 29836243
Alignment:
Q  32 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  29836291 ttagggtttggcaattagggtaaacatgtttgctaggattagatataaa 29836243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 40981614 - 40981662
Alignment:
Q  32 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  40981614 ttagggtttggaaattagggtaagcatgtttgctaggattagatataaa 40981662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 35219835 - 35219908
Alignment:
Q  252 atgatgaaaccacaccatgtcatgcaattaaaatttaaaattatcactgaatttttcacaacatgtttagatta 325  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||| |||||||| || |||||||||||||||    
T  35219835 atgatgaaaccacaccatgtcatgtaaacaaaatttaaaattatcattgaattttacaaaacatgtttagatta 35219908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 26955466 - 26955416
Alignment:
Q  30 gattagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||||||| | ||||||| |||||||||||||||| ||||||||||||    
T  26955466 gattagggtttggcaattagggtaaacatgtttgctagaattagatataaa 26955416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 38681192 - 38681141
Alignment:
Q  29 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    |||||||||||| | || |||| ||| |||||||||||||||||||||||||    
T  38681192 ggattagggtttagcaaatagggtaagcatgtttgctaggattagatataaa 38681141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 29129182 - 29129134
Alignment:
Q  32 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  29129182 ttagggtttggcaattagggtaaacatgtttgctaggattagatataaa 29129134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 44712575 - 44712611
Alignment:
Q  44 aattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||||||||||||||||||||||||| |||||||    
T  44712575 aattaggataaacatgtttgctaggattatatataaa 44712611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 52126940 - 52126889
Alignment:
Q  29 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    |||||||||||  | ||||||| ||| |||||||||||||||||||||||||    
T  52126940 ggattagggttaagaaattagggtaagcatgtttgctaggattagatataaa 52126889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 24759529 - 24759478
Alignment:
Q  29 ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    |||||||||||  | ||||||| |||||||||||||||||||||||||||||    
T  24759529 ggattagggttaagaaattagggtaaacatgtttgctaggattagatataaa 24759478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 1971144 - 1971096
Alignment:
Q  32 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  1971144 ttagggtttggaaattagggtaagcatgtttgctaggattagatataaa 1971096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 11503256 - 11503211
Alignment:
Q  32 ttagggttttggaattaggataaacatgtttgctaggattagatat 77  Q
    ||||||||| | |||||||||||| ||||||| |||||||||||||    
T  11503256 ttagggtttcgcaattaggataaatatgtttggtaggattagatat 11503211  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 13761853 - 13761785
Alignment:
Q  12 tttggagccattttgttggattagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    |||| ||||||||| | |||||||| || || ||||||| |   |||||||||||||||||||||||||    
T  13761853 tttgaagccattttttaggattaggtttatgcaattagggtttgcatgtttgctaggattagatataaa 13761785  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 4768559 - 4768482
Alignment:
Q  3 tttaaattatttggagccattttgtt-ggattagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    |||||||| |||||||||||||| || || |||||||||   ||||||||||| ||||||||||| |||||||||||||    
T  4768559 tttaaatt-tttggagccatttttttaggtttagggtttgacaattaggataagcatgtttgctaagattagatataaa 4768482  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 26449146 - 26449097
Alignment:
Q  31 attagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    |||||||||| | ||||||| ||| |||||||||||||||||||||||||    
T  26449146 attagggtttggcaattagggtaagcatgtttgctaggattagatataaa 26449097  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 23073454 - 23073509
Alignment:
Q  29 ggattagggttttggaattaggataaacatgtttgctaggattagatataaaagat 84  Q
    ||||||||||||   ||||||| ||| ||||||||| |||||||||||||||||||    
T  23073454 ggattagggtttgacaattagggtaagcatgtttgcaaggattagatataaaagat 23073509  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 2319948 - 2319908
Alignment:
Q  40 ttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||||||| ||||||| |||| ||||||||||||||||    
T  2319948 ttggaattagggtaaacatatttgttaggattagatataaa 2319908  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 8840690 - 8840654
Alignment:
Q  44 aattaggataaacatgtttgctaggattagatataaa 80  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  8840690 aattagggtaagcatgtttgctaggattagatataaa 8840654  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 230516 - 230468
Alignment:
Q  32 ttagggttttggaattaggataaacatgtttgctaggattagatataaa 80  Q
    |||||||| || |||||||||   |||||||||||||||||||||||||    
T  230516 ttagggttatgcaattaggatttgcatgtttgctaggattagatataaa 230468  T

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