View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13840_low_4 (Length: 568)
Name: NF13840_low_4
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13840_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Original strand, 225783 - 226278
Alignment:
| Q |
19 |
gctccttcacagcgtgttccaaaccactcttcttctaagaagacagaagacgctcgtgatggtaccatatttaaagatcccgactatctccaatttcttc |
118 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225783 |
gctccttcacagcgtgttccaaaccactctt---ctaagaagccagaagacgctcgcgatggtaccatatttaaagatcccgactatctccaatttcttc |
225879 |
T |
|
| Q |
119 |
aacaaattgcaaagcctgtcgagaatctccctagtgctgaaatacagttggacaaaagggaagccttacggaaagatattcctatagtcacaccacttat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
225880 |
aacaaattgcaaagcctgtcgagaatctccctagtgctgaaatacagttggacaaaagggaagccgtacggaaagatattcctatagtcacaccacttat |
225979 |
T |
|
| Q |
219 |
ggactttgtgcgccacaaaagagctaccaagaatggtcctcgggtaatttttcttatcatcagagttgttgcatttgcattgcattgcatgcatgcactc |
318 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
225980 |
ggactttgtccgccacaaaagagctaccaagaatggacctcgggtaatttttcttatcatcagagttg----------------gttcatgcatgcactc |
226063 |
T |
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| Q |
319 |
cttcttagcaagtcatcctttccttgcttacttcatatctgtnnnnnnnnnnnnnnnnnntagatcattgtctaatggaaaagtcaccagaagaactgtc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
226064 |
cttcttagcaagtcatcctttccttgcttacttcatatctgt---gcagcagcagcagcatagatcattgtctaatggaaaagtcaccagaagatct--- |
226157 |
T |
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| Q |
419 |
gtcacaacatcaaatggaagctctacttctgccccatctagacgtggttacacaaagaatagagtttccaccacaatgg---tattatgcaattatgctt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
226158 |
ctcacaacatcaaatggaagctctacttctgccccatctagacgtggttacacaaagaatagactttccaccacaatggtattattatgcaattatgctt |
226257 |
T |
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