View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13840_low_5 (Length: 546)
Name: NF13840_low_5
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13840_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 21 - 540
Target Start/End: Original strand, 36686245 - 36686764
Alignment:
| Q |
21 |
gttcagcgagtgcttacctttggtcttgcttcttgtagaggtaattttagagatattttagttcattttgttggttgctttgttgttcttcttgaccgtg |
120 |
Q |
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| T |
36686245 |
gttcagcgagtgcttacctttggtcttgcttcttgtagaggtaattttagagatattttagttcattttgttggttgctttgttgttcttcttgaccgtg |
36686344 |
T |
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| Q |
121 |
ttttcaaactctattgttgacccgtaatctcgtctaaatttacgtttttaggtttgtgtttggtgttgatttcatgataaacttgttttatagtgaaatc |
220 |
Q |
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| T |
36686345 |
ttttcaaactctattgttgacccgtaatctcgtctaaatttacgtttttaggtttgtgtttagtgttgatttgatgataaacttgttttatagtgaaatc |
36686444 |
T |
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| Q |
221 |
gaagctggcaccgaatttgaccgattcaactagcgacaaaattgaagaaatcggataaactcgtctgattttaagcgaatttgcgattttccattnnnnn |
320 |
Q |
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| T |
36686445 |
gaagctggcaccgaatttgaccgattcaactagcgacaaaattgaggaaatcggattaactcgtctgattttaagcgaatttgcgattttccattaaaaa |
36686544 |
T |
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| Q |
321 |
nnnnntcgggccaaatttgatttcttgccctataagtcatttaacatgtttgaatcttatcattgattttcttaccatagtgatgattcaattttactta |
420 |
Q |
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| T |
36686545 |
aaaaatctggccaaatttgatttcttgccctataagtcatttaacatgtttgaatcttatcaataactttcttaccattgtgatgattcaattttactta |
36686644 |
T |
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| Q |
421 |
ataatctttgtgattgtgaccatttccttcttcatcttcttaacctggttcatatttgtttctttccttttcacttttacttgttacnnnnnnngaaaaa |
520 |
Q |
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| T |
36686645 |
ataatctttgtgattgtgaccatttccttcttcatcttcttaaccttgttcatatttgtttctttcgttttcacttttacttgttactttttttgaaaaa |
36686744 |
T |
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| Q |
521 |
tcacttggttagatcctttg |
540 |
Q |
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| T |
36686745 |
tcacttggttagatcctttg |
36686764 |
T |
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