View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13840_low_6 (Length: 521)
Name: NF13840_low_6
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13840_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Complemental strand, 5778927 - 5778427
Alignment:
| Q |
19 |
agttttcatctatttggatttataatctgtgttgcatcaacagctgccagagcatttaaatcagtgcttcaagatattttgttgtcttcggaagggtaat |
118 |
Q |
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| T |
5778927 |
agttttcatctatttggatttataatctgtgttgcatcaacagctgccagagcatttaaatcagtgcttcaagatattttgttgtcttcggaagggtaat |
5778828 |
T |
|
| Q |
119 |
gatcttattgaatttggattctttgtagataagaaatcgtagtcaagcaatccagacagcctgatcaagagttgacgactcacattccaacttactttgc |
218 |
Q |
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| T |
5778827 |
gatcttattgaatttggattctttgtagataggaaatcgtagtcaagcaatccagacagcctgatcaagagttgacgactcacattccaacttactttgc |
5778728 |
T |
|
| Q |
219 |
aatctgatttacaaagttggaaaacgagtagttaaatcttgatcaaatagtccagagtgcgtgactgcggcaagtgtatgatgtcatgatccgttggccg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| |||||| ||||||||||||||||||| |
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| T |
5778727 |
aatctgatttacaaagttggaaaacgagtagttaaatcttgatcaaatagttcagattacgtgactgcggcaaatgtatgttgtcatgatccgttggccg |
5778628 |
T |
|
| Q |
319 |
cacataatccggatccgattctatttgttttgtcattgttatatacaagatatttgtcataaaagactatgaagtagtgagacatacatgaacaacagac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
5778627 |
cacataatccggatccgattctatttgttttgtcattgttatatacaagatatttgtcataaaagactatgaagcagtgacacatacatgaacaatagac |
5778528 |
T |
|
| Q |
419 |
acgtcactgacaatgacacttatacatcaaaactagtggtaatttgagacaataaatcaattgaatgtaatcacatgtgctgctgtgtgtccttgtctgt |
518 |
Q |
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| T |
5778527 |
acgtcactgacaatgacacttatacatcgaaactagtggtaatttgagacaataaatcaattgaatgtaatcacatgtgctgctgtgtgtccttgtctgt |
5778428 |
T |
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| Q |
519 |
g |
519 |
Q |
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| T |
5778427 |
g |
5778427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 497
Target Start/End: Original strand, 28322244 - 28322291
Alignment:
| Q |
450 |
actagtggtaatttgagacaataaatcaattgaatgtaatcacatgtg |
497 |
Q |
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| T |
28322244 |
actagtgataatttgagaaaatgaattaattgaatgtaatcacatgtg |
28322291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 494
Target Start/End: Complemental strand, 5461217 - 5461181
Alignment:
| Q |
458 |
taatttgagacaataaatcaattgaatgtaatcacat |
494 |
Q |
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|||||||||| ||||||| |||||||||||||||||| |
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| T |
5461217 |
taatttgagataataaattaattgaatgtaatcacat |
5461181 |
T |
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