View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13840_low_7 (Length: 481)
Name: NF13840_low_7
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13840_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 13 - 462
Target Start/End: Complemental strand, 47812933 - 47812484
Alignment:
| Q |
13 |
aatatgcagtttattggtaacgaggtgtttcccctctacaagctcgtatgggaagtgaataaacttgttcattagaagagaatgtgctttcagcatcaaa |
112 |
Q |
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| T |
47812933 |
aatatgcagtgtattggtaacgaggtgtttcccctctacaagctcgtatgggaagtgaataaacttgttcattagaagagaatgtgctttcagcatcaaa |
47812834 |
T |
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| Q |
113 |
tacacattaatgattaatcaaatagacagatgattatgcttgagcttctacaaaaagctgatatcattgtcattttgtcaaactcaccgtcaatccaaac |
212 |
Q |
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| T |
47812833 |
tacacattaatgattaatcaaatagacagatgattatgcttgagcttctacaaaaagctgatatcattgtcattttgtcaaactcaccgtcaatccaaac |
47812734 |
T |
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| Q |
213 |
atacacttaatttaaaaatacataggaatatttgatacgtggaatcgggataatgtgtgggacaaagggtttggagatgttttgtgtttaataagtcaaa |
312 |
Q |
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| T |
47812733 |
atacacttaatttaaaaatacataggaatatttgatacgtggaatcgggataatgtgtgggacaaagggtttagagatgttttgtgtttaataagtcaaa |
47812634 |
T |
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| Q |
313 |
aagagcactcactttgaatagtgaacctctgcctctactcaataagtatgctgcaattattcttagccttaggactcaatgaacggcttataatgaggat |
412 |
Q |
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| T |
47812633 |
aagagcactcactttgaacagtgaacctctgcctctactcaataagtatgctgcaattattcttagccttaggactcaatgaacggcttataatgaggat |
47812534 |
T |
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| Q |
413 |
aatatgaagattttttatgctcctactccatgtttgagtagccttctgtt |
462 |
Q |
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| T |
47812533 |
aatatgaagattttttatgctcctactccatgtttgagtagccttctgtt |
47812484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 1905645 - 1905611
Alignment:
| Q |
184 |
attttgtcaaactcaccgtcaatccaaacatacac |
218 |
Q |
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| T |
1905645 |
attttgtcaaactcaccgtcaatccaaacagacac |
1905611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 29670655 - 29670691
Alignment:
| Q |
183 |
cattttgtcaaactcaccgtcaatccaaacatacact |
219 |
Q |
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| T |
29670655 |
cattctgtcaaactcaccgtgaatccaaacatacact |
29670691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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