View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13840_low_8 (Length: 480)
Name: NF13840_low_8
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13840_low_8 |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 31044748 - 31044292
Alignment:
| Q |
1 |
ttgtccatgtagatcatgaatggttaaatatctttcattcttattagttttattgacatttttactttgatttttaaagataatgaatagttagtnnnnn |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31044748 |
ttgtccatgtagataatgaatggttaaatatctttcattcttattagttttaatgacatttttacttcgatttttaaagataatgaatagttagtaaaaa |
31044649 |
T |
|
| Q |
101 |
nnnttcaattagacatgttttctttatgaattttggcattttatgaattggagagtcaagaggattaactagataacatcgttgaaatgctgtgcccgtg |
200 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31044648 |
aaaatcaattagaccttttttctttatgaattttggcattttatgaattggagagtcaagaggattaactagataacatcgttgaaatgctgcacccgtg |
31044549 |
T |
|
| Q |
201 |
ttgaattttggcatattatgcattggagagtcaaaaggataaactggataacatcattgaaattggatttttacttctgttttggtcttgctatggccgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31044548 |
ttgaattttggcatattatgcattggagagtcaaaaggataaactggataacatcattgaaattggatttttacttctgttttggtcttgctatggccgt |
31044449 |
T |
|
| Q |
301 |
attgaattttggattctgattcagaagcttaccaagtgtttctgtgatctctataagccggtcagacggataggtgaactattatttgaaaccatatcat |
400 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31044448 |
attgaattttggattctgattcagaagcttgccaagtgtttctgtgatctctataagccagtcagacggataggtgaactattatttgaaaccatatcac |
31044349 |
T |
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| Q |
401 |
ggtgacccaaatacgacagccctgcacctgccaaattctgcagaagttaattcagcc |
457 |
Q |
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| T |
31044348 |
ggtgacccaaatacaacagccctgcacctgccaaattctgcagaagttaattcagcc |
31044292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 462
Target Start/End: Complemental strand, 31044294 - 31044262
Alignment:
| Q |
430 |
gccaaattctgcagaagttaattcagcctttcg |
462 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
31044294 |
gccaaattctgcagaagttaattcagcctttcg |
31044262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 8 - 378
Target Start/End: Original strand, 18654 - 19033
Alignment:
| Q |
8 |
tgtagatcatgaatggttaaatatctttcattcttattagttttattgacatttttactttgatttttaaagataatgaatagttagtnnnnnnnnttca |
107 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |
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| T |
18654 |
tgtagataatgaatggttaaatatctttcattctttgtagttttattgacatttttgcttcgatttttaaagataatgaatagttagttaaaaaaattca |
18753 |
T |
|
| Q |
108 |
attagacatg----------ttttctttatgaattttggcattttatgaattggagagtcaagaggattaactagataacatcgttgaaatgctgtgccc |
197 |
Q |
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||||||| | |||| ||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||||| | || |
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| T |
18754 |
attagaccttctttttttttttttttttatgaattttggcattttatgaagt--agagtcaaaaggattaactagataacatcattgaaatgctgcgtcc |
18851 |
T |
|
| Q |
198 |
gtgttgaattttggcatattatgcattggagagtcaaaaggataaactggataacatcattgaaattggatttttacttctgttttggtcttgctatggc |
297 |
Q |
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|| |||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||| |||||||| | |
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| T |
18852 |
gtattgaattttggcatattatgaataggagagtcaaaaggattaactggataacatcattgaaattgaatttttatttctgtttttgtcttgctgcacc |
18951 |
T |
|
| Q |
298 |
cgtattgaattt-tggattctgattcagaagcttaccaagtgtttctgtgatctctataagccggtcagacggataggtgaa |
378 |
Q |
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||||||||||| ||| || |||| ||||| || |||| ||||||| || || |||||||| ||||||| ||||||||||| |
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| T |
18952 |
tgtattgaatttatggcatccgattaagaagtttgccaattgtttctatggtccctataagctggtcagaaggataggtgaa |
19033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 205 - 341
Target Start/End: Original strand, 172894 - 173030
Alignment:
| Q |
205 |
attttggcatattatgcattggagagtcaaaaggataaactggataacatcattgaaattggatttttacttctgttttggtcttgctatggccgtattg |
304 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |||| |||||| |||||||||||| |||| |||||||||||| |||||| | |||||||| |
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| T |
172894 |
attttggcatattatgtgttggagagtcaaaaggattaactagataacctcattgaaattgaatttgtacttctgtttttgtcttgttgcatccgtattg |
172993 |
T |
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| Q |
305 |
aattttggattctgattcagaagcttaccaagtgttt |
341 |
Q |
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|||||||| || |||| ||||| || ||||| |||| |
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| T |
172994 |
aattttggcatccgattaagaagtttgccaagcgttt |
173030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 172772 - 172952
Alignment:
| Q |
2 |
tgtccatgtagatcatgaatggttaaatatctttcattcttattagttttattgacatttttactttgatttttaaagataatgaatagttagtnnnnnn |
101 |
Q |
| |
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||||||| ||||||||||||| |||||||| ||||||||| ||| |||||||||||||||| || ||||||||||||||||| ||| ||| |
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| T |
172772 |
tgtccatatagatcatgaatgattaaatattcttcattctttttaattttattgacatttttgtttcgatttttaaagataatggata-tta----aaca |
172866 |
T |
|
| Q |
102 |
nnttcaattagacatgttttctttatgaattttggcattttatgaattggagagtcaagaggattaactagataacatcgttgaaat |
188 |
Q |
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|||| |||||| |||| |||||| |||||||||| ||||| |||||||||||| ||||||||||||||||| || ||||||| |
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| T |
172867 |
atttcagttagac-ccttttttttatggattttggcatattatgtgttggagagtcaaaaggattaactagataacctcattgaaat |
172952 |
T |
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