View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13840_low_9 (Length: 466)

Name: NF13840_low_9
Description: NF13840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13840_low_9
NF13840_low_9
[»] chr3 (30 HSPs)
chr3 (10-451)||(22429694-22430135)
chr3 (26-170)||(22366686-22366830)
chr3 (30-170)||(22629205-22629345)
chr3 (26-170)||(22352572-22352716)
chr3 (26-158)||(22441519-22441651)
chr3 (26-170)||(22634220-22634364)
chr3 (26-88)||(37929600-37929662)
chr3 (236-328)||(22352066-22352158)
chr3 (26-153)||(22356769-22356896)
chr3 (26-137)||(22466743-22466854)
chr3 (24-121)||(22435442-22435539)
chr3 (236-303)||(22366184-22366251)
chr3 (343-408)||(22633594-22633659)
chr3 (26-137)||(22457305-22457416)
chr3 (26-137)||(22480286-22480397)
chr3 (239-301)||(22434893-22434955)
chr3 (343-408)||(22440867-22440930)
chr3 (235-301)||(22633717-22633783)
chr3 (185-235)||(22633804-22633854)
chr3 (343-445)||(22351932-22352031)
chr3 (167-235)||(22352180-22352248)
chr3 (183-234)||(24735020-24735071)
chr3 (343-402)||(22366061-22366120)
chr3 (252-295)||(22441004-22441047)
chr3 (173-227)||(22356335-22356389)
chr3 (238-278)||(22434812-22434852)
chr3 (171-227)||(22441093-22441149)
chr3 (365-409)||(22448837-22448881)
chr3 (186-229)||(22366279-22366322)
chr3 (343-390)||(22434705-22434752)
[»] chr4 (1 HSPs)
chr4 (237-300)||(29604073-29604136)


Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Complemental strand, 22430135 - 22429694
Alignment:
Q  10 agatgaagatgacaatagagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22430135 agatgaagatgacaatagagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaat 22430036  T
Q  110 caatcagatgcacgaattggagaaactaaatattagtggagtcgaatctgacacattcattccccaactgagaacgttaccaactgatattcaacactta 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22430035 caatcagatgcacgaattggagaaactaaatattagtggagtcgaatctgacacattcattccccaactgagaacgttaccagctgatattcaacactta 22429936  T
Q  210 cacaagcttgaagttctctgtcttcaacagagcattgttcccgatgaaggagaagagcattggatcttcaagcaagtgccctctgtagaaattgttagat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22429935 cacaagcttgaagttctctgtcttcaacagagcattgttcccgatgaaggagaagagcattggatcttcaagcaagtgccctctgtagaaattgttagat 22429836  T
Q  310 aaaaggtacgctttcgcttctttacaattttactaatatttattgtttagtcatgaaaatacaagcattatgtaatttttagtaaaataatttatcgact 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22429835 aaaaggtacgctttcgcttctttacaattttactaatatttattgtttagtcatgaaaatacaagcattatgtaatttttagtaaaataatttatcgact 22429736  T
Q  410 gttagcaacaaaaataaaaataatttatcgacttttgcattt 451  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22429735 gttagcaacaaaaataaaaataatttatcgacttttgcattt 22429694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 22366830 - 22366686
Alignment:
Q  26 agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaa 125  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||| |||||||  ||    
T  22366830 agagctaggaaaactaaagcagctaagggaattgggcttggccggtgttaggagtaaatatatgagtgctatatcttcttcaatcaataagatgcaacaa 22366731  T
Q  126 ttggagaaactaaatattagtggagtcgaatctgacacattcatt 170  Q
     |||||||||||||||||||||||||||||| ||| |||||||||    
T  22366730 ctggagaaactaaatattagtggagtcgaatatgagacattcatt 22366686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 22629345 - 22629205
Alignment:
Q  30 ctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaattgg 129  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||| |||||||||||||||||||| ||| ||||||||||||| |||||||  ||||||    
T  22629345 ctaggaaagctaaatcagctaagggaattggtcttgctcggtgttaggagtaaatatatgagtgctatatcttcctcaatcaataagatgcaacaattgg 22629246  T
Q  130 agaaactaaatattagtggagtcgaatctgacacattcatt 170  Q
    |||||||| | |||||||||||| ||| |||||||||||||    
T  22629245 agaaactacaaattagtggagtccaatatgacacattcatt 22629205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 22352716 - 22352572
Alignment:
Q  26 agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaa 125  Q
    |||||||||||||||||||||||||||||| |||| ||||  ||||||| |||||||||||||||||||| ||| |||||||||||||||||||||  ||    
T  22352716 agagctaggaaagctaaatcagctaagggagttggtcttgtacggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatcagatgcaaaaa 22352617  T
Q  126 ttggagaaactaaatattagtggagtcgaatctgacacattcatt 170  Q
    |||||||||||| |||||| ||||||||   || |||||||||||    
T  22352616 ttggagaaactatatattattggagtcgtgccttacacattcatt 22352572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 22441651 - 22441519
Alignment:
Q  26 agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaa 125  Q
    |||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||| || |||||||||  |||||||  ||    
T  22441651 agagctaggaaagctaaaacagctaaggaaattgggcttgaccggtgttaggagtaaatatatgagtgctatatctttctcaatcaacgagatgcaacaa 22441552  T
Q  126 ttggagaaactaaatattagtggagtcgaatct 158  Q
    ||||||||||||| ||||||||||||| |||||    
T  22441551 ttggagaaactaattattagtggagtccaatct 22441519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 22634364 - 22634220
Alignment:
Q  26 agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaa 125  Q
    |||||||||||||||||| ||||| ||||||||  |||||| ||||||| |||||||||||||||||||| ||| ||||||||||||  |||||||  ||    
T  22634364 agagctaggaaagctaaagcagcttagggaattaagcttggtcggtgttaggagtaaatatatgagtgctatatcttcctcaatcaacaagatgcaacaa 22634265  T
Q  126 ttggagaaactaaatattagtggagtcgaatctgacacattcatt 170  Q
    |||||||||||||||||||| ||| ||  || | |||||||||||    
T  22634264 ttggagaaactaaatattagaggaatcagatataacacattcatt 22634220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 37929662 - 37929600
Alignment:
Q  26 agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatat 88  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  37929662 agagctaggaaagctaaaacagctaagggaattgggcttggccggtgttaggagtaaatatat 37929600  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 328
Target Start/End: Complemental strand, 22352158 - 22352066
Alignment:
Q  236 acagagcattgttcccgatgaaggagaagagcattggatcttcaagcaagtgccctctgtagaaattgttagataaaaggtacgctttcgctt 328  Q
    ||||||||||| ||| ||||||||| |||| | |||||||||||| ||||||||||||||||||||| | | |||||||||||||| ||||||    
T  22352158 acagagcattgctcctgatgaaggaaaagaacgttggatcttcaaccaagtgccctctgtagaaattttgaaataaaaggtacgctgtcgctt 22352066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 22356896 - 22356769
Alignment:
Q  26 agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaa 125  Q
    |||||| ||||| ||||| ||||| ||||||||| |||||  |||| ||  ||||||||||||||||| | ||| ||||||||||||| |||||||  ||    
T  22356896 agagctgggaaaactaaagcagcttagggaattgagcttgagcggtcttaagagtaaatatatgagtggtatatcttcctcaatcaatgagatgcaaaaa 22356797  T
Q  126 ttggagaaactaaatattagtggagtcg 153  Q
    ||||||||||||| |||||  |||||||    
T  22356796 ttggagaaactaagtattaaaggagtcg 22356769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 22466854 - 22466743
Alignment:
Q  26 agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaa 125  Q
    ||||||||||||||||||| || ||||  ||||| |||||   |||||| |||||||||||||||||||| ||| ||||||||||||||| |||||  ||    
T  22466854 agagctaggaaagctaaataagataagaaaattgagcttgataggtgttaggagtaaatatatgagtgctatatcttcctcaatcaatcaaatgcaacaa 22466755  T
Q  126 ttggagaaacta 137  Q
     |||||||||||    
T  22466754 atggagaaacta 22466743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 22435539 - 22435442
Alignment:
Q  24 atagagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgca 121  Q
    |||||||||||||||||||  ||||| ||||||||||||||||  | |||| |  ||||||||||||||||| ||| ||||||||||||| |||||||    
T  22435539 atagagctaggaaagctaacacagcttagggaattgggcttggttgttgttagtggtaaatatatgagtgctatatcttcctcaatcaataagatgca 22435442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 22366251 - 22366184
Alignment:
Q  236 acagagcattgttcccgatgaaggagaagagcattggatcttcaagcaagtgccctctgtagaaattg 303  Q
    ||||||||||| ||| ||| ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  22366251 acagagcattgctcctgataaaggaaaagagcattggatcttcaagcaagtgccctttgtagaaattg 22366184  T

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Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 22633659 - 22633594
Alignment:
Q  343 taatatttattgtttagtcatgaaaatacaagcattatgtaatttttagtaaaataatttatcgac 408  Q
    |||||||||||||| |||||| ||||||||| |||||||| ||||||||||||||||||| |||||    
T  22633659 taatatttattgttgagtcatcaaaatacaaacattatgtgatttttagtaaaataatttctcgac 22633594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 22457416 - 22457305
Alignment:
Q  26 agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaa 125  Q
    |||||||||||| ||||| || ||||||||||||| ||||  ||||||| ||||   ||| ||||||||| ||| ||||||||||||| |||||||  ||    
T  22457416 agagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagcggatacatgagtgctatatcttcctcaatcaatgagatgcaaaaa 22457317  T
Q  126 ttggagaaacta 137  Q
     |||||||||||    
T  22457316 gtggagaaacta 22457305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 22480397 - 22480286
Alignment:
Q  26 agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaa 125  Q
    |||||||||||| ||||| || ||||||||||||| ||||  ||||||| ||||   ||| ||||||||| ||| ||||||||||||| |||||||  ||    
T  22480397 agagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagcggatacatgagtgctatatcttcctcaatcaatgagatgcaaaaa 22480298  T
Q  126 ttggagaaacta 137  Q
     |||||||||||    
T  22480297 gtggagaaacta 22480286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 22434955 - 22434893
Alignment:
Q  239 gagcattgttcccgatgaaggagaagagcattggatcttcaagcaagtgccctctgtagaaat 301  Q
    |||||||| ||| |||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  22434955 gagcattgatcctgatgaaggagaaaagcatttgatcttcaagcaagtgccctctatagaaat 22434893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 22440930 - 22440867
Alignment:
Q  343 taatatttattgtttagtcatgaaaatacaagcattatgtaatttttagtaaaataatttatcgac 408  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||| ||| |||||    
T  22440930 taatatttattgtttagtcatcaaaatac--gcattatgtaatttttagtaaaatactttctcgac 22440867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 22633783 - 22633717
Alignment:
Q  235 aacagagcattgttcccgatgaaggagaagagcattggatcttcaagcaagtgccctctgtagaaat 301  Q
    |||||||||||| |||  |||||||| ||||||||||||| |||||||||||||||| |||||||||    
T  22633783 aacagagcattgctcctaatgaaggaaaagagcattggatattcaagcaagtgccctttgtagaaat 22633717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 22633854 - 22633804
Alignment:
Q  185 gttaccaactgatattcaacacttacacaagcttgaagttctctgtcttca 235  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  22633854 gttaccaactggcattcaacacttacacaagcttgaagttctctgtcttca 22633804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 445
Target Start/End: Complemental strand, 22352031 - 22351932
Alignment:
Q  343 taatatttattgtttagtcatgaaaatacaagcattatgtaatttttagtaaaataatttatcgactgttagcaacaaaaataaaaataatttatcgact 442  Q
    |||||||||||||||||| || |||||||||||||| | |||| ||   ||||||||||| | |||| ||||||  ||||||||||||||||| |||| |    
T  22352031 taatatttattgtttagttatcaaaatacaagcattctataatatt---taaaataatttcttgactattagcagaaaaaataaaaataatttctcgatt 22351935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 22352248 - 22352180
Alignment:
Q  167 cattccccaactgagaacgttaccaactgatattcaacacttacacaagcttgaagttctctgtcttca 235  Q
    ||||||||||||||  |||||||||||||  ||||||||||||||| ||||| |||||||| |||||||    
T  22352248 cattccccaactgatgacgttaccaactggcattcaacacttacacgagcttcaagttctccgtcttca 22352180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 24735071 - 24735020
Alignment:
Q  183 acgttaccaactgatattcaacacttacacaagcttgaagttctctgtcttc 234  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||||    
T  24735071 acgttaccaactggcattcaacacttacacaagcttcaagttctctgtcttc 24735020  T

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Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 402
Target Start/End: Complemental strand, 22366120 - 22366061
Alignment:
Q  343 taatatttattgtttagtcatgaaaatacaagcattatgtaatttttagtaaaataattt 402  Q
    ||||||||| ||||| |||||  |||||||||| ||| ||||||||||||||||||||||    
T  22366120 taatatttactgttttgtcatctaaatacaagctttaggtaatttttagtaaaataattt 22366061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 22441047 - 22441004
Alignment:
Q  252 gatgaaggagaagagcattggatcttcaagcaagtgccctctgt 295  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||    
T  22441047 gatgaaggaaaagagcattggatcttcaaccaagtgccctctgt 22441004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 22356389 - 22356335
Alignment:
Q  173 ccaactgagaacgttaccaactgatattcaacacttacacaagcttgaagttctc 227  Q
    ||||||||  || ||||||||||  ||||||||||||||||||||||||||||||    
T  22356389 ccaactgatgactttaccaactggcattcaacacttacacaagcttgaagttctc 22356335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 22434852 - 22434812
Alignment:
Q  238 agagcattgttcccgatgaaggagaagagcattggatcttc 278  Q
    ||||||||||||| ||||||||||||| |||||||||||||    
T  22434852 agagcattgttcctgatgaaggagaagtgcattggatcttc 22434812  T

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Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 22441149 - 22441093
Alignment:
Q  171 ccccaactgagaacgttaccaactgatattcaacacttacacaagcttgaagttctc 227  Q
    ||||||||||  |||||||||| ||  |||||||||||||| |||||||||||||||    
T  22441149 ccccaactgatgacgttaccaagtggcattcaacacttacaaaagcttgaagttctc 22441093  T

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Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 22448881 - 22448837
Alignment:
Q  365 aaaatacaagcattatgtaatttttagtaaaataatttatcgact 409  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||||    
T  22448881 aaaatataagcattatgtaatttttactaaaataatttctcgact 22448837  T

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Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 22366322 - 22366279
Alignment:
Q  186 ttaccaactgatattcaacacttacacaagcttgaagttctctg 229  Q
    ||||||||||  |||||||||||||| |||||||||||||||||    
T  22366322 ttaccaactggcattcaacacttacaaaagcttgaagttctctg 22366279  T

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Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 22434752 - 22434705
Alignment:
Q  343 taatatttattgtttagtcatgaaaatacaagcattatgtaattttta 390  Q
    ||||||||| || |||||||| ||| ||||||||||||||||||||||    
T  22434752 taatatttactgcttagtcattaaagtacaagcattatgtaattttta 22434705  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 29604136 - 29604073
Alignment:
Q  237 cagagcattgttcccgatgaaggagaagagcattggatcttcaagcaagtgccctctgtagaaa 300  Q
    |||||||||| |||||   ||||| ||||| ||||||||||||||||||| |||| ||||||||    
T  29604136 cagagcattgctcccgtcaaaggaaaagagtattggatcttcaagcaagtaccctttgtagaaa 29604073  T

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