View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13841_high_10 (Length: 392)
Name: NF13841_high_10
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 1154136 - 1153782
Alignment:
| Q |
18 |
acttaattgtgttcaatttgctagtaacaagtaattaattatttggtactgttttgtgcagcttggtattgtgctgggaaaggctaagagtggtgaccag |
117 |
Q |
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| T |
1154136 |
acttaattgtgttcaatttgctagtaacaagtaattaattatctggtactgttttgtgcagcttggtattgtgctgggaaaggctaagagtggtgaccag |
1154037 |
T |
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| Q |
118 |
agtaccgatgcttcctcagagtagtggaactgacaggagatgatgaaactctactgcttgtagagtactgtgtgtaataaactgaatttgtggtgtagaa |
217 |
Q |
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| T |
1154036 |
agtactgatgcttcctcagagtagtggaactgacaggagatgatgaaactctactgcttgtagagtactgtgtgtaataaactgaatttgtggtgtagaa |
1153937 |
T |
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| Q |
218 |
tgtagatagatatatgttggcgttctttcattccttagtttgttttctcttttgtctcgggggccaataaactgtgctgatgatagcccttctgaaagta |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1153936 |
tgtagatagatatatgttggtgttctttcattccttagtttgttttctcttttgtctcgggggccaataaaccgtgctgatgatagcccttctgaaagta |
1153837 |
T |
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| Q |
318 |
gatttttgtgcaaagctattgcaattttagtcatgtaataaacaaagtattcctg |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1153836 |
gatttttgtgcaaagctattgcaattttagtcatgtaataaacaaagtattcctg |
1153782 |
T |
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