View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13841_high_17 (Length: 313)
Name: NF13841_high_17
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_high_17 |
 | |
|
| [»] scaffold0204 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 43219065 - 43218764
Alignment:
| Q |
1 |
cttgtatttcaaattgtttttcctctggttctgcatttcagtgccactcactctcattggaggatttttggggacaaaagctgagcaaattgaatttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43219065 |
cttgtatttcaaattgtttttcctctggttctgcatttcagtgccactcactctcattggaggatttttggggacaaaagctgagcaaattgaatttcct |
43218966 |
T |
|
| Q |
101 |
gtgcgaactaaccagattccaagagaaattcctgcacgcaaatatccatcatggcttcttgttcttggtgccggaactcttccatttggaacccttttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43218965 |
gtgcgaactaaccagattccaagagaaattcctgcacgcaaatatccatcatggcttcttgttcttggtgccggaactcttccatttggaacccttttta |
43218866 |
T |
|
| Q |
201 |
tcgagcttttctttatcctttctagtatctggcttgggaggttctattatgtttttggttttctgctggttgttcttttactgttgactattgtctgtgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43218865 |
tcgagcttttctttatcctttctagtatctggcttgggaggttctattatgtttttggttttctgctggttgttcttttactgttgactattgtctgtgc |
43218766 |
T |
|
| Q |
301 |
tg |
302 |
Q |
| |
|
|| |
|
|
| T |
43218765 |
tg |
43218764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 37071719 - 37071981
Alignment:
| Q |
15 |
tgtttttcctctggttctgcatttcagtgccactcactctcattggaggatttttggggacaaaagctgagcaaattgaatttcctgtgcgaactaacca |
114 |
Q |
| |
|
|||| |||||||||||||| |||||||| || || || |||||||| |||||| |||||||||||| |||| ||| |||| |||||| | || || || |
|
|
| T |
37071719 |
tgttcttcctctggttctgtatttcagtacctctgaccctcattggcggatttatggggacaaaaggagagccaatcgaatatcctgtaaggaccaatca |
37071818 |
T |
|
| Q |
115 |
gattccaagagaaattcctgcacgcaaatatccatcatggcttcttgttcttggtgccggaactcttccatttggaacccttttcatcgagcttttcttt |
214 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
37071819 |
gattccaagggaaattcctgcaaggaaatatccatcttggcttcttgttcttggtgctggaactcttccatttggaaccctcttcattgagcttttcttt |
37071918 |
T |
|
| Q |
215 |
atcctttctagtatctggcttgggaggttctattatgtttttggttttctgctggttgttctt |
277 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||| || |||||||| ||| ||||||||||| |
|
|
| T |
37071919 |
atcctctctagcatctggctcgggaggttctattacgtgtttggtttcctgttggttgttctt |
37071981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 924 - 998
Alignment:
| Q |
143 |
tatccatcatggcttcttgttcttggtgccggaactcttccatttggaacccttttcatcgagcttttctttatc |
217 |
Q |
| |
|
||||| || |||||| | ||||| ||||| || || ||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
924 |
tatccgtcgtggcttttagttctaggtgctggcacccttccctttggaacccttttcattgagctcttctttatc |
998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University