View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13841_high_2 (Length: 502)
Name: NF13841_high_2
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_high_2 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 31525032 - 31524531
Alignment:
| Q |
1 |
ccacagtgtgaaacaaaaccaccaatggaaggatgtttcaaaatagtgacttgtggtgcccattcatgaagaaacaaacccacattcttattcttaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31525032 |
ccacagtgtgaaacaaaaccaccaatggaaggatgtttcaaaatagtgacttgtggtgcccattcatgaagaaacaaacccacattcttattcttaattc |
31524933 |
T |
|
| Q |
101 |
tctctacaaacctctcaggtaagtgcttacctatttgatcatcaagttcatcgccaaacccgtcaccactggatccagtggtgaaaaaagctgcgtccac |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31524932 |
tctctacaaacccctcaggtaagtgcttacctatttgatcatcaagttcatcgccaaacccgtcaccaccggatccagtggtgaaaaaagctgcgtccac |
31524833 |
T |
|
| Q |
201 |
agcttctgttgtggacgcacacgcacgtaccacccaaacaaatctttgttcacttaattctaaaccaaaagctatttcattcatttgctcatacgacaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
31524832 |
agcttctgttgtggacgcacacgcacgtaccacccaaacaaatctttgttcacttaattctaaaccaaaagctaattcattcatttgctcatttgacaaa |
31524733 |
T |
|
| Q |
301 |
gttccaccgctcccaaacgaaacgtaaaccactgattcctttggttgtttatcaagccaatgaattacagactcaatagcttgacctgtttctgactcag |
400 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
31524732 |
gttccaccgctcccaaacgaaacataaaccactgattcctttggttgtttatcaagccattgaattacagactcagaagcttgacctatttctgactcag |
31524633 |
T |
|
| Q |
401 |
cttgtctcaccaagggtccaactgcaaatacaggaactttcaataaacttgataattctccatcttcatcattcagtgctttaagctctctatgttgaag |
500 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31524632 |
cttgtctcaccaggggtccaactgcaaacacaggaactttcaataaacttgatagttctccatctccatcattcagtgctttaagctctctatgttgaag |
31524533 |
T |
|
| Q |
501 |
tt |
502 |
Q |
| |
|
|| |
|
|
| T |
31524532 |
tt |
31524531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University