View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13841_high_20 (Length: 300)
Name: NF13841_high_20
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_high_20 |
 | |
|
| [»] scaffold0524 (1 HSPs) |
| | |
|
| [»] scaffold0607 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 34 - 299
Target Start/End: Original strand, 32953996 - 32954261
Alignment:
| Q |
34 |
tgatattcatatggatggttatgttttcacttggttcaaaagtcttgaaactgtccgcgttgtggaggagaaattggatagagctatggctaatgatagt |
133 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32953996 |
tgatattcctatggatggttatgctttcacttggttcaaaagtcttggaactgttcgcgctgtggaggagaaattggatagagctatggctaatgatagt |
32954095 |
T |
|
| Q |
134 |
tggtttgataaatttcagaacgcaaaacttgagtgtcttactaccacatcgtccaatcattaccctcttttgttggattgtgctccgcagcctgcgccta |
233 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32954096 |
tggtttgataaatttaagaacgcaaaacttgagtgtcttactaccacatcctctgatcattaccctcttttgttggattgtgctccgcagcctgcgtcta |
32954195 |
T |
|
| Q |
234 |
gttccggtcaacgtcgctttcattttgagaatgcgtggcttgttgaacgcgagtttgggccctttg |
299 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
32954196 |
gttccggtcaacgtcgttttcgttttgagaattcgtggcttgttgaacccgagtttgggccttttg |
32954261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 14781037 - 14780950
Alignment:
| Q |
92 |
gttgtggaggagaaattggatagagctatggctaatgatagttggtttgataaatttcagaacgcaaaacttgagtgtcttactaccac |
180 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||| | ||| ||||| |||||||||||||| |
|
|
| T |
14781037 |
gttgtggaggaaaaattggatagagctatggctaatgatagttgctttgatatattaaagaatg-aaagcttgaatgtcttactaccac |
14780950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32953866 - 32953904
Alignment:
| Q |
1 |
tcaacttccttggtatattattggtgattttaatgatat |
39 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
32953866 |
tcaacttccttggtgtattattggagattttaatgatat |
32953904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 34 - 299
Target Start/End: Complemental strand, 9613080 - 9612815
Alignment:
| Q |
34 |
tgatattcatatggatggttatgttttcacttggttcaaaagtcttgaaactgtccgcgttgtggaggagaaattggatagagctatggctaatgatagt |
133 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9613080 |
tgatattcatatggatggttatgctttcacttggttcaaaagtcttggaactgtccgcgctgtggaggagaaattggatagagctatggctaataatagt |
9612981 |
T |
|
| Q |
134 |
tggtttgataaatttcagaacgcaaaacttgagtgtcttactaccacatcgtccaatcattaccctcttttgttggattgtgctccgcagcctgcgccta |
233 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9612980 |
tggtttgataaatttcagaacgctaagcttgaatgtcttactaccacatcttctgatcattaccctcttttgttggattgtgctccgcagcctacgccta |
9612881 |
T |
|
| Q |
234 |
gttccggtcaacgtcgctttcattttgagaatgcgtggcttgttgaacgcgagtttgggccctttg |
299 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
9612880 |
gtcccggtcaacgtcgctttcgatttgagaatgcgtggcttgttgaacctgagtttgggccttttg |
9612815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 35 - 291
Target Start/End: Complemental strand, 27455963 - 27455706
Alignment:
| Q |
35 |
gatattcatatggatggttatgttttcacttggttcaaaagtcttgaaactgtccgcgttgtggaggagaaattggatagagctatggctaatgatagtt |
134 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||| || ||||| | || ||||||||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
27455963 |
gatatttacatggatggttatgttttcacttggttcaaaagcctcgaaacagatcgagttgtggaggaaaaattagatagagctatgtgaaatgatagtt |
27455864 |
T |
|
| Q |
135 |
ggtttg-ataaatttcagaacgcaaaacttgagtgtcttactaccacatcgtccaatcattaccctcttttgttggattgtgctccgcagcctgcgccta |
233 |
Q |
| |
|
|||| | | ||||||||||| ||||||||||| | | |||| |||||||| ||| |||| |||||| ||| | | |||||| |||| || ||||| ||| |
|
|
| T |
27455863 |
ggttcgaaaaaatttcagaatgcaaaacttgaatattttaccaccacatcctccgatcactaccctttttggctagattgtactccacaacctgcttcta |
27455764 |
T |
|
| Q |
234 |
gttccggtcaacgtcgctttcattttgagaatgcgtggcttgttgaacgcgagtttgg |
291 |
Q |
| |
|
||| ||| ||||||| || ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
27455763 |
gttgtggtatacgtcgcatttgctttgagaatgcgtggcttgttgaacccgaatttgg |
27455706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 9613206 - 9613169
Alignment:
| Q |
4 |
acttccttggtatattattggtgattttaatgatattc |
41 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9613206 |
acttccttggtgtattattggtgattttaatgatattc |
9613169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 34 - 299
Target Start/End: Complemental strand, 26432774 - 26432509
Alignment:
| Q |
34 |
tgatattcatatggatggttatgttttcacttggttcaaaagtcttgaaactgtccgcgttgtggaggagaaattggatagagctatggctaatgatagt |
133 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26432774 |
tgatattcatatggatggttatgctttcacttggttcaaaagtcttggaactgtccgcgctgtggaggagaaattggatagagctatggctaataatagt |
26432675 |
T |
|
| Q |
134 |
tggtttgataaatttcagaacgcaaaacttgagtgtcttactaccacatcgtccaatcattaccctcttttgttggattgtgctccgcagcctgcgccta |
233 |
Q |
| |
|
||||||||||||||||||||||| || |||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26432674 |
tggtttgataaatttcagaacgctaagtttgaatgtcttactaccacatcttctgatcattaccctcttttgttggattgtgctccgcagcctgcgccta |
26432575 |
T |
|
| Q |
234 |
gttccggtcaacgtcgctttcattttgagaatgcgtggcttgttgaacgcgagtttgggccctttg |
299 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
26432574 |
gtcccggtcaacgtcgctttcgctttgagaatgcgtggcttgttgaacctgagtttgggccttttg |
26432509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 48443290 - 48443372
Alignment:
| Q |
98 |
gaggagaaattggatagagctatggctaatgatagttggtttgataaatttcagaacgcaaaacttgagtgtcttactaccac |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || || |||||||| |
|
|
| T |
48443290 |
gaggagaaattggatagagctatggctaatgatagttggtttgataaattctagaatgcaaaacttgaatgcctgactaccac |
48443372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 34 - 299
Target Start/End: Complemental strand, 3965875 - 3965610
Alignment:
| Q |
34 |
tgatattcatatggatggttatgttttcacttggttcaaaagtcttgaaactgtccgcgttgtggaggagaaattggatagagctatggctaatgatagt |
133 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3965875 |
tgatattcatatggatggttatgctttcacatggttcaaaagtcttggaactgtccgcgctgtggaggagaaattggatagagctatggctaataatagt |
3965776 |
T |
|
| Q |
134 |
tggtttgataaatttcagaacgcaaaacttgagtgtcttactaccacatcgtccaatcattaccctcttttgttggattgtgctccgcagcctgcgccta |
233 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3965775 |
tggtttgataagtttcagaacgctaagcttgaatgtcttactaccacatcatctgatcattaccctcttttgttggattgtgctccgcagcctgcgccta |
3965676 |
T |
|
| Q |
234 |
gttccggtcaacgtcgctttcattttgagaatgcgtggcttgttgaacgcgagtttgggccctttg |
299 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||| |||||| ||||| |||| |
|
|
| T |
3965675 |
gttccggtcaacgtcgctttcgctttgagaatgtgtggcttgttgaacccgagttcgggccttttg |
3965610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 3966001 - 3965964
Alignment:
| Q |
4 |
acttccttggtatattattggtgattttaatgatattc |
41 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3966001 |
acttccttggtgtattattggtgattttaatgatattc |
3965964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0524 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 34 - 299
Target Start/End: Complemental strand, 357 - 92
Alignment:
| Q |
34 |
tgatattcatatggatggttatgttttcacttggttcaaaagtcttgaaactgtccgcgttgtggaggagaaattggatagagctatggctaatgatagt |
133 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
357 |
tgatattcatatggatggttatgctttcacttggttcaaaagtcttggaactactcgcgctgtggaggagaaattggatagagctatggcaaatgatagt |
258 |
T |
|
| Q |
134 |
tggtttgataaatttcagaacgcaaaacttgagtgtcttactaccacatcgtccaatcattaccctcttttgttggattgtgctccgcagcctgcgccta |
233 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | |||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
257 |
tggtttgataaatttcagaacgtaaaacttgcgcgtcttactactacatcctcttatcattaccctcttttgttggattgttctccgcagcctgcgccta |
158 |
T |
|
| Q |
234 |
gttccggtcaacgtcgctttcattttgagaatgcgtggcttgttgaacgcgagtttgggccctttg |
299 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
157 |
gttccagtcaacgtcgctttcgttttgagaatgcatggcttgttgaacccgagtttgggccttttg |
92 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 89 - 299
Target Start/End: Complemental strand, 46094042 - 46093832
Alignment:
| Q |
89 |
cgcgttgtggaggagaaattggatagagctatggctaatgatagttggtttgataaatttcagaacgcaaaacttgagtgtcttactaccacatcgtcca |
188 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || | |
|
|
| T |
46094042 |
cgcgatgtggaggagaaattggatagagctatggctaatgatatttggtttgataaatttcagaacgcaaaatttgagtgtcttactaccacatcctcta |
46093943 |
T |
|
| Q |
189 |
atcattaccctcttttgttggattgtgctccgcagcctgcgcctagttccggtcaacgtcgctttcattttgagaatgcgtggcttgttgaacgcgagtt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46093942 |
atcattaccctcttttgttggattgtgctccgcagcctacgcctagttccggtcaacgtcgctttcattttgagaatgcgtggcttgttgaacgcgagtt |
46093843 |
T |
|
| Q |
289 |
tgggccctttg |
299 |
Q |
| |
|
|||||| |||| |
|
|
| T |
46093842 |
tgggccttttg |
46093832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 216
Target Start/End: Complemental strand, 8968313 - 8968137
Alignment:
| Q |
40 |
tcatatggatggttatgttttcacttggttcaaaagtcttgaaactgtccgcgttgtggaggagaaattggatagagctatggctaatgatagttggttt |
139 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| | | | | || || | ||||||||||| || |||||||| ||||||||||| | |||||| |
|
|
| T |
8968313 |
tcatatggatggttatgctttcaattggttcaagattttaggaattgatagtgttgtggaggaataaaaagatagagcaatggctaatgacaaatggttt |
8968214 |
T |
|
| Q |
140 |
gataaatttcagaacgcaaaacttgagtgtcttactaccacatcgtccaatcattaccctcttttgttggattgtgc |
216 |
Q |
| |
|
||||| |||||||| ||||||||||| | ||| || ||||| || || |||| |||||||||| | | |||||||| |
|
|
| T |
8968213 |
gataactttcagaatgcaaaacttgaatatctcaccaccacttcatctgatcactaccctctttggctcgattgtgc |
8968137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0607 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0607
Description:
Target: scaffold0607; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 7072 - 7193
Alignment:
| Q |
34 |
tgatattcatatggatggttatgttttcacttggttcaaaagtcttgaaactgtccgcgttgtggaggagaaattggatagagctatggctaatgatagt |
133 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7072 |
tgatattcatatggatggttatgctttcacttggttcaaaagtcttgaaactgttcgcgctgtggaggagaaattggatagagctatggcaaatgatagt |
7171 |
T |
|
| Q |
134 |
tggtttgataaatttcagaacg |
155 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7172 |
tggtttgataaatttcagaacg |
7193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 183
Target Start/End: Complemental strand, 19915495 - 19915354
Alignment:
| Q |
36 |
atattcatatggatggttatgttttcacttggttcaaaagtcttgaaactgtccgcgttgtggaggagaaattggatagagctatggctaatgatagttg |
135 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| || ||| || ||||||||| ||||| ||||||||||||| ||||||||||| |
|
|
| T |
19915495 |
atattcatatggatggttatgctttcacttggttcaaaagcctcagaac------cgatgtggaggaaaaattagatagagctatggaaaatgatagttg |
19915402 |
T |
|
| Q |
136 |
gtttgataaatttcagaacgcaaaacttgagtgtcttactaccacatc |
183 |
Q |
| |
|
||| || ||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
19915401 |
gttcgacaaatttcagaatgcaaagcttgaatgtcttactaccacatc |
19915354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 19916620 - 19916586
Alignment:
| Q |
35 |
gatattcatatggatggttatgttttcacttggtt |
69 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
19916620 |
gatattcatatggatggttatgctttcacttggtt |
19916586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19915626 - 19915586
Alignment:
| Q |
1 |
tcaacttccttggtatattattggtgattttaatgatattc |
41 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
19915626 |
tcaacttccttggtgtattattggagattttaataatattc |
19915586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 23775976 - 23775885
Alignment:
| Q |
95 |
gtggaggagaaattggatagagctatggctaatgatagttggtttgataaatttcagaacgcaaaacttgagtgtcttactaccacatcgtc |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || || |||||||| ||||| |
|
|
| T |
23775976 |
gtggaggagaaattggatagagctatggctaatgatagttggtttgataaattccagattgcaaaacttgaatgcctgactaccacttcgtc |
23775885 |
T |
|
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Target: scaffold0004 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 213107 - 213205
Alignment:
| Q |
100 |
ggagaaattggatagagctatggctaatgatagttggtttgataaatttcagaacgcaaaacttgagtgtcttactaccacatcgtccaatcattaccc |
198 |
Q |
| |
|
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|
|
| T |
213107 |
ggagaaattggatagagccgtggctaatgatagttggtttgataaattccagagtgcaaaacttggatgccttactaccacttcatctaatcactaccc |
213205 |
T |
|
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