View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13841_high_21 (Length: 283)
Name: NF13841_high_21
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 10772380 - 10772114
Alignment:
| Q |
1 |
caaagtttattttataagcaataacactctaaccaaacacacttcatcttcttctttgttcatcttgaaaattgttattccttgataagatgagcatcaa |
100 |
Q |
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| T |
10772380 |
caaagtttgttttataagcaataacactctaaccaaacacacttcatcttcatctttgttcatcttgtaa-ttgttattccttgataagatgagcatcaa |
10772282 |
T |
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| Q |
101 |
tatcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttctcatactcaaaagtccatttcacaaa |
200 |
Q |
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| T |
10772281 |
tatcttttgtgacctttgcagcaaattccaaaaatgaatcaggagatggacctgtaatatcctcctttagtttctcatactcaaatgtccatttcacaat |
10772182 |
T |
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| Q |
201 |
c---ccaccatgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccactt |
265 |
Q |
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| T |
10772181 |
cccaccaccatgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccactt |
10772114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 2 - 259
Target Start/End: Complemental strand, 10777658 - 10777407
Alignment:
| Q |
2 |
aaagtttattttataagcaataacactctaaccaaacacacttcatcttcttctttgttcatcttgaaaattgttattccttgataagatgagcatcaat |
101 |
Q |
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| T |
10777658 |
aaagtttatttaatatgcaataacactcaagccaaacacacttcatcct------tgttcatctttg---ttgctattccttgacaagatgagaatcaat |
10777568 |
T |
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| Q |
102 |
atcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttctcatactcaaaagtccatttcacaa-- |
199 |
Q |
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| T |
10777567 |
atcttttatgagctttacagcaaagtccaagtatgaatcaggagatgaacctgcaatttcctcctttagcttctcatattcataagtccatttcacaatt |
10777468 |
T |
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| Q |
200 |
-acccaccatgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcac |
259 |
Q |
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| T |
10777467 |
ccaccaccatgttctttatgaatcacttgtaatattgcctttaaactcttgtaattctcac |
10777407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 76 - 265
Target Start/End: Complemental strand, 10784376 - 10784184
Alignment:
| Q |
76 |
tattccttgataagatgagcatcaatatcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttct |
175 |
Q |
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| T |
10784376 |
tattccttggcaagatgagaatcaatatcttttgtgacctttacagcaaggtccaagtatgaatcaggagatccacctgtaatttcctcttttagcttct |
10784277 |
T |
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| Q |
176 |
catactcaaaagtccatttcacaaac---ccaccatgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccactt |
265 |
Q |
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| T |
10784276 |
catattcgtatgcccatttaacaatcccaccaccatgttctttatggatcacttgtaatattgcctttaaactcttgtaattttcactcactt |
10784184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 10791061 - 10790956
Alignment:
| Q |
87 |
aagatgagcatcaatatcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttctcatactcaaaa |
186 |
Q |
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| T |
10791061 |
aagatgataatcaatatcttttgtgacctctgcaacaaggtccaagtataaatcaggacatgcacctataatatcctcctttactttctcatactcaaaa |
10790962 |
T |
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| Q |
187 |
gtccat |
192 |
Q |
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|||||| |
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| T |
10790961 |
gtccat |
10790956 |
T |
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