View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13841_high_34 (Length: 216)
Name: NF13841_high_34
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13841_high_34 |
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| [»] scaffold0607 (1 HSPs) |
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| [»] scaffold0524 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: scaffold0607 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0607
Description:
Target: scaffold0607; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 6961 - 6780
Alignment:
| Q |
16 |
aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
115 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6961 |
aatacaccaaggaggttgaaaaatattggataaatgccgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
6862 |
T |
|
| Q |
116 |
cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttct |
197 |
Q |
| |
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|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6861 |
cttcatcttcccctcaaagagtcatttacctccgtatcaatatgattttgggagaaattcatgatagtacaattaaagttct |
6780 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0524 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 468 - 649
Alignment:
| Q |
16 |
aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
115 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
468 |
aatacaccaaggaggttgaaaaatattggataaatgccgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
567 |
T |
|
| Q |
116 |
cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttct |
197 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
568 |
cttcatcttcccctcaaagagtcatttacctccatatcaatatgattttgggagaaattcatgatagtgcaattaaagttct |
649 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 9613191 - 9613372
Alignment:
| Q |
16 |
aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
115 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
9613191 |
aatacaccaaggaagtggagacatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccatagaatccagttaac |
9613290 |
T |
|
| Q |
116 |
cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttct |
197 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||| |
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|
| T |
9613291 |
ctccatcttcccttaacagagtcatttacctccatatcaatatgattctgggagaaatttgtgatagtacaattaaagttct |
9613372 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 62 - 197
Target Start/End: Complemental strand, 14554968 - 14554833
Alignment:
| Q |
62 |
ttccaagactctcttctcctccctccttctggcataccataaaatccagttagccttcatcttcccttaaaagagtcatttacctctatatcaatatgat |
161 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||| ||| |||| ||||||||| ||||| ||| | ||||| ||||| ||||| ||||||||| ||| |
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|
| T |
14554968 |
ttccaagatgctcttctccttcctccttttggcatactatataatcgagttagcctccatctgcccctcaaagaatcattaacctccatatcaataagat |
14554869 |
T |
|
| Q |
162 |
tttgggagaaattcataatagtacaattaaagttct |
197 |
Q |
| |
|
||||| ||||||| | || |||||||||||||||| |
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|
| T |
14554868 |
tttggaagaaatttgtgatggtacaattaaagttct |
14554833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 3965986 - 3966167
Alignment:
| Q |
16 |
aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
115 |
Q |
| |
|
|||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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|
| T |
3965986 |
aatacaccaaggaagtggagacatatttgataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccatagaatccagttaac |
3966085 |
T |
|
| Q |
116 |
cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttct |
197 |
Q |
| |
|
|| ||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||| |
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|
| T |
3966086 |
ctccatcttcccctaatagagtcatttacctccatatcaatatgattctgggagaaatttgtgatagtacaattaaagttct |
3966167 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 53 - 197
Target Start/End: Original strand, 46094041 - 46094185
Alignment:
| Q |
53 |
cgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagccttcatcttcccttaaaagagtcatttacctctatat |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |
|
|
| T |
46094041 |
cgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagcctccatcttcccctaaaagagtcatttacctccatat |
46094140 |
T |
|
| Q |
153 |
caatatgattttgggagaaattcataatagtacaattaaagttct |
197 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
46094141 |
caatatgattttgggagaaattcgtaataatacaattaaagttct |
46094185 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 2540006 - 2539824
Alignment:
| Q |
16 |
aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
115 |
Q |
| |
|
|||| ||||||||||||| |||| |||| |||| || ||||||| |||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
2540006 |
aatacaccaaggaagttgggaaagattgaataattgaagaagtaaattccaaaactctcttctccttcctccttctggcataccataacatcaagttagc |
2539907 |
T |
|
| Q |
116 |
cttcatctt-cccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttct |
197 |
Q |
| |
|
|| ||| || ||| | ||||||||||| ||||| |||||||| |||||||||||||||||| |||||||| ||||||| |||| |
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|
| T |
2539906 |
ctccatattgcccctcaaagagtcattaacctccatatcaatgtgattttgggagaaattcgtaatagtataattaaaattct |
2539824 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 48443114 - 48442962
Alignment:
| Q |
16 |
aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
115 |
Q |
| |
|
|||| |||||||||| || |||| ||||||||||||||||||||| |||||||||||||| | ||| |||||||| |||||||||||||| ||||||| | |
|
|
| T |
48443114 |
aatacaccaaggaagctgggaaagattggataaatgtcgaagtaaattccaagactctctccgccttcctccttccggcataccataaaaaccagttaac |
48443015 |
T |
|
| Q |
116 |
cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttggga |
168 |
Q |
| |
|
| | | | ||| | ||||| ||||| | ||| | |||||||||||||||||| |
|
|
| T |
48443014 |
caccgtatccccctcaaagaatcattaaactccacatcaatatgattttggga |
48442962 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 32953884 - 32953703
Alignment:
| Q |
16 |
aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
115 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| |||||| ||||| |||||||||| || || ||||| ||||||||||| || ||||||| | |
|
|
| T |
32953884 |
aatacaccaaggaagttgagaaagattggataaatgtctaagtaaattccaggactctcttcgtctaccaccttccggcataccatagaaaccagttaac |
32953785 |
T |
|
| Q |
116 |
cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgggagaaattcataatagtacaattaaagttct |
197 |
Q |
| |
|
|| ||||| ||| | ||||| ||| | ||||| ||||||||||||||||||||||||||| | ||| |||||| ||| |||| |
|
|
| T |
32953784 |
ctccatctacccctcaaagaatcagtaacctccatatcaatatgattttgggagaaattcgtgatattacaatgaaaattct |
32953703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 212980 - 212857
Alignment:
| Q |
16 |
aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
115 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||||||||||||| | |
|
|
| T |
212980 |
aatacaccaaggaagctgagaaagattggataaatgtcgaagtaaattccaagactctctccgtctccctccttc-ggcataccataaaatccagttaac |
212882 |
T |
|
| Q |
116 |
cttcatcttcccttaaaagagtcat |
140 |
Q |
| |
|
|| ||||||||| | ||||| |||| |
|
|
| T |
212881 |
ctccatcttcccctcaaagaatcat |
212857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 23776148 - 23776300
Alignment:
| Q |
16 |
aatataccaaggaagttgagaaatattggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttagc |
115 |
Q |
| |
|
|||| |||||||||| || |||| |||||||| |||||||||||| ||||||||||| || | || |||||||| |||||||||||||| ||||||| | |
|
|
| T |
23776148 |
aatacaccaaggaagctgggaaagattggatatatgtcgaagtaaattccaagactccctccctcttcctccttccggcataccataaaaaccagttaac |
23776247 |
T |
|
| Q |
116 |
cttcatcttcccttaaaagagtcatttacctctatatcaatatgattttggga |
168 |
Q |
| |
|
|| ||||||||| | ||||| ||||| || || | |||||||||||||||||| |
|
|
| T |
23776248 |
ctccatcttcccctcaaagaatcattaacatccacatcaatatgattttggga |
23776300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 19915608 - 19915758
Alignment:
| Q |
16 |
aatataccaaggaagttgagaaatatt-ggataaatgtcgaagtaagttccaagactctcttctcctccctccttctggcataccataaaatccagttag |
114 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||||| || |||||||| ||||| |||||||||||||| || || |||||||||||| || ||||| | |
|
|
| T |
19915608 |
aatacaccaaggaagttgagaaagatttggataactgccgaagtaaattccaggactctcttctccttccatttt-tggcataccatagaaaccagtcaa |
19915706 |
T |
|
| Q |
115 |
ccttcatcttcccttaaaagagtcatttacctctatatcaatatgattttgg |
166 |
Q |
| |
|
||| |||||||| | ||||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
19915707 |
cctccatcttcctctcaaagagtcattaacctccatatcaatataattttgg |
19915758 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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