View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13841_high_6 (Length: 430)

Name: NF13841_high_6
Description: NF13841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13841_high_6
NF13841_high_6
[»] chr4 (12 HSPs)
chr4 (53-414)||(11314707-11315069)
chr4 (167-288)||(48708893-48709014)
chr4 (34-96)||(7490338-7490399)
chr4 (28-94)||(10519136-10519203)
chr4 (34-96)||(7230279-7230338)
chr4 (167-293)||(8498357-8498483)
chr4 (34-96)||(29908055-29908114)
chr4 (24-58)||(54294415-54294449)
chr4 (24-98)||(10529270-10529346)
chr4 (24-61)||(11314650-11314687)
chr4 (34-94)||(17423180-17423237)
chr4 (201-245)||(50560783-50560827)
[»] chr7 (9 HSPs)
chr7 (25-98)||(46418522-46418595)
chr7 (37-106)||(27544946-27545012)
chr7 (34-106)||(20085762-20085830)
chr7 (37-98)||(41029269-41029327)
chr7 (24-95)||(46987086-46987154)
chr7 (24-96)||(1398388-1398459)
chr7 (24-92)||(18714451-18714516)
chr7 (35-95)||(30296333-30296390)
chr7 (34-98)||(39280821-39280882)
[»] chr3 (7 HSPs)
chr3 (28-95)||(48849760-48849823)
chr3 (167-288)||(11965884-11966005)
chr3 (57-98)||(5702200-5702241)
chr3 (57-96)||(21967555-21967595)
chr3 (57-96)||(21989991-21990031)
chr3 (57-96)||(33771689-33771729)
chr3 (57-96)||(51250255-51250295)
[»] chr5 (6 HSPs)
chr5 (167-288)||(23683440-23683561)
chr5 (167-288)||(23851250-23851371)
chr5 (24-98)||(27679495-27679566)
chr5 (29-58)||(21139146-21139175)
chr5 (37-98)||(34702487-34702545)
chr5 (28-96)||(3445244-3445309)
[»] chr2 (6 HSPs)
chr2 (185-249)||(22563534-22563598)
chr2 (24-104)||(7052764-7052842)
chr2 (24-95)||(20120714-20120782)
chr2 (29-95)||(23250318-23250381)
chr2 (53-96)||(2661066-2661110)
chr2 (37-97)||(24593374-24593431)
[»] chr1 (6 HSPs)
chr1 (34-96)||(7484693-7484756)
chr1 (24-98)||(38448859-38448930)
chr1 (24-98)||(5907796-5907867)
chr1 (24-98)||(6000136-6000207)
chr1 (29-95)||(32560973-32561036)
chr1 (28-96)||(34632168-34632233)
[»] chr8 (4 HSPs)
chr8 (167-259)||(14776657-14776749)
chr8 (24-58)||(30176412-30176446)
chr8 (37-98)||(19778062-19778120)
chr8 (57-97)||(36919309-36919350)
[»] chr6 (1 HSPs)
chr6 (38-96)||(20480634-20480693)
[»] scaffold0416 (1 HSPs)
scaffold0416 (185-291)||(579-685)
[»] scaffold0262 (1 HSPs)
scaffold0262 (34-96)||(15933-15992)
[»] scaffold0238 (1 HSPs)
scaffold0238 (24-98)||(25386-25457)


Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 53 - 414
Target Start/End: Original strand, 11314707 - 11315069
Alignment:
Q  53 atatatatactatacattgtctt-accaactgagttaagctcacgggcacaaagacattgattttacgacaaaatctcttatttctaaatgatatttggt 151  Q
    ||||||||| ||||||||||||| | ||||||||||||||| ||| | |||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  11314707 atatatatattatacattgtctttatcaactgagttaagcttacgaggacaaggacattgattttacgacaaaacctcttatttctaaatgatatttggt 11314806  T
Q  152 taaagaggtgatgccttccaagcactaagcttggatttaattttatctgcaataggctgaagatgaattcttttaggtttctctttaaaaataggaacac 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11314807 taaagaggtgatgccttccaagcactaagcttggatttaattttatcagcaataggctgaagatgaattcttttaggtttccctttaaaaataggaacac 11314906  T
Q  252 caaggtaattgaaaggaagggaacccttattgaaaccaatcatgttggagatgtgatcaattatagctacagagatagagccataatacacagttgattt 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11314907 caaggtaattgaaaggaagggaacccttattgaaaccaatcatgttggagatgtgatcaattatagctacagagatagagccataatacacagttgattt 11315006  T
Q  352 tgaaggattgatatgctgaccagaaatagctgcatactcttgaaataattgcataagttttat 414  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11315007 tgaaggattgatatgctgaccagaaatagctgcatactcttgtaataattgcataagttttat 11315069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 288
Target Start/End: Complemental strand, 48709014 - 48708893
Alignment:
Q  167 ttccaagcactaagcttggatttaattttatctgcaataggctgaagatgaattcttttaggtttctctttaaaaataggaacaccaaggtaattgaaag 266  Q
    |||||||||| |||||| || ||||| ||||| ||||||||||| | ||||  | |||| |||||| |||||||||| ||||| |||||||||   ||||    
T  48709014 ttccaagcaccaagcttagacttaatcttatccgcaataggctgcaaatgagatttttttggtttccctttaaaaattggaactccaaggtaagaaaaag 48708915  T
Q  267 gaagggaacccttattgaaacc 288  Q
    |||  ||||| ||||| |||||    
T  48708914 gaaaagaacctttattaaaacc 48708893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 7490338 - 7490399
Alignment:
Q  34 tttgaaccccggaccttgcatatatatactatacattgtct-taccaactgagttaagctcacg 96  Q
    ||||||||||  |||||||||||||||  |||||||| ||| ||||||||||||||||||||||    
T  7490338 tttgaaccccacaccttgcatatatat--tatacattttctctaccaactgagttaagctcacg 7490399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 10519203 - 10519136
Alignment:
Q  28 ccgggttttgaaccccggaccttgcatatatatactatacattgtct-taccaactgagttaagctca 94  Q
    ||||| |||||||| || ||||||||| |||||| ||| |||||||| ||||||||||| ||||||||    
T  10519203 ccggggtttgaacctcgaaccttgcatgtatatattatgcattgtctataccaactgagctaagctca 10519136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 7230338 - 7230279
Alignment:
Q  34 tttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcacg 96  Q
    |||||||||||||||||||||||||    ||| |||||| ||||||||||||| ||||||||||    
T  7230338 tttgaaccccggaccttgcatatat----tatgcattgtccttaccaactgagctaagctcacg 7230279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 8498483 - 8498357
Alignment:
Q  167 ttccaagcactaagcttggatttaattttatctgcaataggctgaagatgaattcttttaggtttctctttaaaaataggaacaccaaggtaattgaaag 266  Q
    ||||||||||||||||| |||||||| |||||| |||| || ||||||||   ||| ||  | ||  | || |||||  ||||||||||||||||||| |    
T  8498483 ttccaagcactaagcttagatttaatcttatctacaatcggttgaagatgtgatctcttttgcttacccttgaaaatcagaacaccaaggtaattgaagg 8498384  T
Q  267 gaagggaacccttattgaaaccaatca 293  Q
    | |  ||||| || |||||||||||||    
T  8498383 gcaatgaacctttgttgaaaccaatca 8498357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 29908114 - 29908055
Alignment:
Q  34 tttgaaccccggaccttgcatatatatactatacattgtc-ttaccaactgagttaagctcacg 96  Q
    ||||||| |||||||||||||||||    ||| ||||||| |||||||||||||||||||||||    
T  29908114 tttgaactccggaccttgcatatat----tatgcattgtccttaccaactgagttaagctcacg 29908055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 54294415 - 54294449
Alignment:
Q  24 gtgtccgggttttgaaccccggaccttgcatatat 58  Q
    ||||||||| |||||||||||||||||||||||||    
T  54294415 gtgtccggggtttgaaccccggaccttgcatatat 54294449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 10529270 - 10529346
Alignment:
Q  24 gtgtccgggttttgaaccccggaccttgcatatatatactatacattgtc--ttaccaactgagttaagctcacggg 98  Q
    ||||| ||| || ||| ||||||| ||||||  ||||| |||||||||||  |||||||||||| ||||||||||||    
T  10529270 gtgtctggggttcgaatcccggactttgcatgcatatattatacattgtcctttaccaactgagctaagctcacggg 10529346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 11314650 - 11314687
Alignment:
Q  24 gtgtccgggttttgaaccccggaccttgcatatatata 61  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  11314650 gtgtccggggtttgaacctcggaccttgcatatatata 11314687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 17423180 - 17423237
Alignment:
Q  34 tttgaaccccggaccttgcatatatatactatacattgtct-taccaactgagttaagctca 94  Q
    |||||||||||||||||||||||||    ||| |||||||| ||||||||||||||| ||||    
T  17423180 tttgaaccccggaccttgcatatat----tatgcattgtctctaccaactgagttaacctca 17423237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 50560783 - 50560827
Alignment:
Q  201 caataggctgaagatgaattcttttaggtttctctttaaaaatag 245  Q
    ||||||||||||| || ||||||||||||||| |||| |||||||    
T  50560783 caataggctgaaggtggattcttttaggtttccctttgaaaatag 50560827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 46418522 - 46418595
Alignment:
Q  25 tgtccgggttttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcacggg 98  Q
    |||||||| |||||||||||||| |||||||||| || |||||||||| ||||||||||||||||||||||||||    
T  46418522 tgtccggggtttgaaccccggactttgcatatat-tattatacattgttcttaccaactgagttaagctcacggg 46418595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 27545012 - 27544946
Alignment:
Q  37 gaaccccggaccttgcatatatatactatacattgtc-ttaccaactgagttaagctcacgggcacaaaga 106  Q
    ||||||||||||||||||||||    ||||||||||| |||||||||||| |||||||||||| |||||||    
T  27545012 gaaccccggaccttgcatatat----tatacattgtccttaccaactgagataagctcacggggacaaaga 27544946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 20085762 - 20085830
Alignment:
Q  34 tttgaaccccggaccttgcatatatatactatacattgtcttaccaactgagttaagctcacgggcacaaaga 106  Q
    |||||||||||||||||||||||||    ||| |||||||||||| |||||||||| |||||| | |||||||    
T  20085762 tttgaaccccggaccttgcatatat----tatgcattgtcttaccgactgagttaaactcacgaggacaaaga 20085830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 41029327 - 41029269
Alignment:
Q  37 gaaccccggaccttgcatatatatactatacattgtc-ttaccaactgagttaagctcacggg 98  Q
    ||||||||||||||||||||||    ||||||||||| |||||||||||| ||||||||||||    
T  41029327 gaaccccggaccttgcatatat----tatacattgtccttaccaactgagctaagctcacggg 41029269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 46987154 - 46987086
Alignment:
Q  24 gtgtccgggttttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcac 95  Q
    ||||||||| || ||||||||||||||||||||||    ||| |||||| ||||||||||||| |||||||||    
T  46987154 gtgtccggggttcgaaccccggaccttgcatatat----tatgcattgtccttaccaactgagctaagctcac 46987086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 1398388 - 1398459
Alignment:
Q  24 gtgtccgggttttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcacg 96  Q
    ||||||||| || |||||| ||||| |||||||||||  ||| |||||| ||||||||||||| ||||||||||    
T  1398388 gtgtccgggattcgaaccctggaccgtgcatatatat--tatgcattgtccttaccaactgagctaagctcacg 1398459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 18714516 - 18714451
Alignment:
Q  24 gtgtccgggttttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagct 92  Q
    |||| |||| |||||||||||||||||||||||||    ||| |||||| ||||||||||||| ||||||    
T  18714516 gtgtacggggtttgaaccccggaccttgcatatat----tatgcattgtccttaccaactgagctaagct 18714451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 30296390 - 30296333
Alignment:
Q  35 ttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcac 95  Q
    ||||||||| ||||||||||||||    |||||||||| ||||||||||||| |||||||||    
T  30296390 ttgaaccccagaccttgcatatat----tatacattgtccttaccaactgagctaagctcac 30296333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 39280821 - 39280882
Alignment:
Q  34 tttgaaccccggaccttgcatatatatactatacattg-tcttaccaactgagttaagctcacggg 98  Q
    |||||||||||||||||||||||||    ||| ||||| |||||||||||||| |||| |||||||    
T  39280821 tttgaaccccggaccttgcatatat----tatgcattgttcttaccaactgagctaagttcacggg 39280882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 48849760 - 48849823
Alignment:
Q  28 ccgggttttgaaccccggaccttgcatatatatactatacattgtcttaccaactgagttaagctcac 95  Q
    ||||| |||||||||||||||||||||||||    ||| ||||||| |||||||||||||||||||||    
T  48849760 ccggggtttgaaccccggaccttgcatatat----tatgcattgtcataccaactgagttaagctcac 48849823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 288
Target Start/End: Complemental strand, 11966005 - 11965884
Alignment:
Q  167 ttccaagcactaagcttggatttaattttatctgcaataggctgaagatgaattcttttaggtttctctttaaaaataggaacaccaaggtaattgaaag 266  Q
    |||||||||| |||||| || ||||| ||||| ||||||||||| | ||||  | ||||  |||||||||||||||| ||||| | |||||||   ||||    
T  11966005 ttccaagcaccaagcttagacttaatcttatccgcaataggctgcaaatgagattttttttgtttctctttaaaaattggaactctaaggtaagaaaaag 11965906  T
Q  267 gaagggaacccttattgaaacc 288  Q
    |||  ||||| ||||| |||||    
T  11965905 gaaaagaacctttattaaaacc 11965884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 5702200 - 5702241
Alignment:
Q  57 atatactatacattgtcttaccaactgagttaagctcacggg 98  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||    
T  5702200 atatattatgcattgtcttaccaactgagctaagctcacggg 5702241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 21967595 - 21967555
Alignment:
Q  57 atatactatacattgtc-ttaccaactgagttaagctcacg 96  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  21967595 atatattatacattgtccttaccaactgagttaagctcacg 21967555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 21990031 - 21989991
Alignment:
Q  57 atatactatacattgtc-ttaccaactgagttaagctcacg 96  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  21990031 atatattatacattgtccttaccaactgagttaagctcacg 21989991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 33771729 - 33771689
Alignment:
Q  57 atatactatacattgtc-ttaccaactgagttaagctcacg 96  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  33771729 atatattatacattgtccttaccaactgagttaagctcacg 33771689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 51250255 - 51250295
Alignment:
Q  57 atatactatacattgtc-ttaccaactgagttaagctcacg 96  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  51250255 atatattatacattgtccttaccaactgagttaagctcacg 51250295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 288
Target Start/End: Complemental strand, 23683561 - 23683440
Alignment:
Q  167 ttccaagcactaagcttggatttaattttatctgcaataggctgaagatgaattcttttaggtttctctttaaaaataggaacaccaaggtaattgaaag 266  Q
    |||||||||| |||||| || ||||| ||||| ||||||||||| | ||||  | |||| |||||| |||||||||| ||||| |||||||||   ||||    
T  23683561 ttccaagcaccaagcttagacttaatcttatccgcaataggctgcaaatgagatttttttggtttccctttaaaaattggaactccaaggtaagaaaaag 23683462  T
Q  267 gaagggaacccttattgaaacc 288  Q
    |||  ||||| ||||| |||||    
T  23683461 gaaaagaacctttattaaaacc 23683440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 288
Target Start/End: Original strand, 23851250 - 23851371
Alignment:
Q  167 ttccaagcactaagcttggatttaattttatctgcaataggctgaagatgaattcttttaggtttctctttaaaaataggaacaccaaggtaattgaaag 266  Q
    |||||||||| |||||| || ||||| ||||| ||||||||||| | ||||  | |||| |||||| |||||||||| ||||| |||||||||   ||||    
T  23851250 ttccaagcaccaagcttagacttaatcttatccgcaataggctgcaaatgagatttttttggtttccctttaaaaattggaactccaaggtaagaaaaag 23851349  T
Q  267 gaagggaacccttattgaaacc 288  Q
    |||  ||||| ||||| |||||    
T  23851350 gaaaagaacctttattaaaacc 23851371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 27679566 - 27679495
Alignment:
Q  24 gtgtccgggttttgaaccccggaccttgcatatatatactatacattgtc-ttaccaactgagttaagctcacggg 98  Q
    ||||||||| ||||||||||| |||||||||||||    ||| |||| || |||||||||||| ||||||||||||    
T  27679566 gtgtccgggatttgaaccccgaaccttgcatatat----tatgcattatctttaccaactgagctaagctcacggg 27679495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 21139146 - 21139175
Alignment:
Q  29 cgggttttgaaccccggaccttgcatatat 58  Q
    ||||||||||||||||||||||||||||||    
T  21139146 cgggttttgaaccccggaccttgcatatat 21139175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 34702545 - 34702487
Alignment:
Q  37 gaaccccggaccttgcatatatatactatacattgtc-ttaccaactgagttaagctcacggg 98  Q
    |||||||||||||| |||||||    ||| ||||||| |||||||||||||||||||||||||    
T  34702545 gaaccccggacctttcatatat----tatgcattgtccttaccaactgagttaagctcacggg 34702487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 3445244 - 3445309
Alignment:
Q  28 ccgggttttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcacg 96  Q
    ||||| |||||||||||||||||||||| ||    ||| |||||| ||||||||||||| ||||||||||    
T  3445244 ccgggatttgaaccccggaccttgcatacat----tatgcattgtccttaccaactgagctaagctcacg 3445309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 22563598 - 22563534
Alignment:
Q  185 gatttaattttatctgcaataggctgaagatgaattcttttaggtttctctttaaaaataggaac 249  Q
    ||||| ||||| | |||||||||||||||||||| ||||||||||||  |||| |||||||||||    
T  22563598 gatttgattttgtttgcaataggctgaagatgaaatcttttaggttttcctttgaaaataggaac 22563534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 7052842 - 7052764
Alignment:
Q  24 gtgtccgggttttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcacgggcacaaa 104  Q
    ||||||||| ||||| |||||||||||||||||   || ||| |||||| ||||||||||||| |||||||||||| |||||    
T  7052842 gtgtccggggtttgagccccggaccttgcatat---tattatgcattgtccttaccaactgagctaagctcacggggacaaa 7052764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 20120714 - 20120782
Alignment:
Q  24 gtgtccgggttttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcac 95  Q
    ||||||||| ||||||||||| |||||||||||||    ||| |||||| ||||||||||||| |||||||||    
T  20120714 gtgtccgggatttgaaccccgaaccttgcatatat----tatgcattgtccttaccaactgagctaagctcac 20120782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 23250318 - 23250381
Alignment:
Q  29 cgggttttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcac 95  Q
    |||| ||||||||| |||||||||||||||    ||| |||||| |||||||||||||||||||||||    
T  23250318 cggggtttgaaccctggaccttgcatatat----tatgcattgttcttaccaactgagttaagctcac 23250381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 2661066 - 2661110
Alignment:
Q  53 atatatatactatacattgtc-ttaccaactgagttaagctcacg 96  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||    
T  2661066 atatatatattatgcattgtccttaccaactgagttaagctcacg 2661110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 24593431 - 24593374
Alignment:
Q  37 gaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcacgg 97  Q
    ||||||||||||||||||||||    ||| |||||| ||||||||||||| |||||||||||    
T  24593431 gaaccccggaccttgcatatat----tatgcattgtccttaccaactgagctaagctcacgg 24593374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 7484693 - 7484756
Alignment:
Q  34 tttgaaccccggaccttgcatatatatactatacattgtct-taccaactgagttaagctcacg 96  Q
    |||||||| ||||||||||||||||||| ||| |||||||| ||||| ||||| ||||||||||    
T  7484693 tttgaacctcggaccttgcatatatatattatgcattgtctctaccagctgagctaagctcacg 7484756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 38448859 - 38448930
Alignment:
Q  24 gtgtccgggttttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcacggg 98  Q
    ||||||||| || ||||||||||||||||||||||    ||| |||||| ||||||||||||| ||||||||||||    
T  38448859 gtgtccgggattcgaaccccggaccttgcatatat----tatgcattgtccttaccaactgagctaagctcacggg 38448930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 5907867 - 5907796
Alignment:
Q  24 gtgtccgggttttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcacggg 98  Q
    ||||||||| ||||||||| |||||||||||||||    ||| |||||| ||| ||||||||| ||||||||||||    
T  5907867 gtgtccggggtttgaaccctggaccttgcatatat----tatgcattgtccttgccaactgagctaagctcacggg 5907796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 6000136 - 6000207
Alignment:
Q  24 gtgtccgggttttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcacggg 98  Q
    ||||||||| |||||||| ||||||||||||||||    ||| |||||| || |||||||||||||| ||||||||    
T  6000136 gtgtccggggtttgaacctcggaccttgcatatat----tatgcattgtcctaaccaactgagttaaactcacggg 6000207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 32561036 - 32560973
Alignment:
Q  29 cgggttttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcac 95  Q
    |||| |||||||||||||||||||||||||    |||||||||| | ||||||||||| |||||||||    
T  32561036 cgggatttgaaccccggaccttgcatatat----tatacattgtccataccaactgagataagctcac 32560973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 34632233 - 34632168
Alignment:
Q  28 ccgggttttgaaccccggaccttgcatatatatactatacattgtct-taccaactgagttaagctcacg 96  Q
    ||||| |||||||| |||| |||||||||||    |||||||||||| ||||||||||| ||||||||||    
T  34632233 ccgggatttgaacctcggatcttgcatatat----tatacattgtctataccaactgagctaagctcacg 34632168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 259
Target Start/End: Original strand, 14776657 - 14776749
Alignment:
Q  167 ttccaagcactaagcttggatttaattttatctgcaataggctgaagatgaattcttttaggtttctctttaaaaataggaacaccaaggtaa 259  Q
    |||||||| | |||||| || ||||| ||||| ||||||||||| | ||||  | |||| |||||| |||||||||| ||||| |||||||||    
T  14776657 ttccaagccccaagcttagacttaatcttatccgcaataggctgcaaatgagatttttttggtttccctttaaaaattggaactccaaggtaa 14776749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 30176412 - 30176446
Alignment:
Q  24 gtgtccgggttttgaaccccggaccttgcatatat 58  Q
    ||||||||| |||||||||||||||||||||||||    
T  30176412 gtgtccggggtttgaaccccggaccttgcatatat 30176446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 19778120 - 19778062
Alignment:
Q  37 gaaccccggaccttgcatatatatactatacattgtc-ttaccaactgagttaagctcacggg 98  Q
    ||||||||||||||||||||||    ||| ||||||| |||||||||||| ||||||||||||    
T  19778120 gaaccccggaccttgcatatat----tatgcattgtccttaccaactgagctaagctcacggg 19778062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 36919350 - 36919309
Alignment:
Q  57 atatactatacattgt-cttaccaactgagttaagctcacgg 97  Q
    ||||| |||||||||| |||||||||||||||||||||||||    
T  36919350 atatattatacattgttcttaccaactgagttaagctcacgg 36919309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 20480634 - 20480693
Alignment:
Q  38 aaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcacg 96  Q
    |||||||||||||||||||||  | ||| |||||| | ||||||||||||||||||||||    
T  20480634 aaccccggaccttgcatatattaattatgcattgttcctaccaactgagttaagctcacg 20480693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 291
Target Start/End: Original strand, 579 - 685
Alignment:
Q  185 gatttaattttatctgcaataggctgaagatgaattcttttaggtttctctttaaaaataggaacaccaaggtaattgaaaggaagggaacccttattga 284  Q
    ||||| ||||| |||||||||||||| || |||   |||||||||||| |||| |||||||| ||||| |  || |||||||| || | ||| || ||||    
T  579 gatttgattttgtctgcaataggctgcaggtgagaccttttaggtttccctttgaaaatagggacacctaaatagttgaaaggtagagtacctttgttga 678  T
Q  285 aaccaat 291  Q
    |||||||    
T  679 aaccaat 685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 15933 - 15992
Alignment:
Q  34 tttgaaccccggaccttgcatatatatactatacattgt-cttaccaactgagttaagctcacg 96  Q
    |||||||||| ||||||||||||||    |||||||||| |||||||| |||||||||||||||    
T  15933 tttgaaccccagaccttgcatatat----tatacattgtccttaccaattgagttaagctcacg 15992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 25457 - 25386
Alignment:
Q  24 gtgtccgggttttgaaccccggaccttgcatatatatactatacattgtc-ttaccaactgagttaagctcacggg 98  Q
    ||||| ||| || |||||| |||||||||||||||    ||| ||||||| |||||||||||||||||||||||||    
T  25457 gtgtctggggttcgaaccctggaccttgcatatat----tatgcattgtccttaccaactgagttaagctcacggg 25386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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